Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8660GT64.0% 143.9 / 153.1 193intergenic (‑949/‑219)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (26/37);  new base T (61/51);  total (101/92)
Fisher's exact test for biased strand distribution p-value = 1.16e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 195 total aligned reads displayed.

CGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACT  >  CP000730/1929733‑1929998
                                                                                                                                       |                                                                                                                                      
cGATTCAATCTATCAGCTACAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGACGTGTA‑TAA‑g‑g                                                                                                                                      <  1:465892/135‑1 (MQ=255)
    tCAATCTATCAGCGAGAATCATATAACTTACCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGACGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGAt                                                                                                                                 <  2:150070/135‑1 (MQ=255)
            tCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTAttt                                                                                                                         >  1:594254/1‑135 (MQ=255)
                cTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGt                                                                                                                     <  2:514913/135‑1 (MQ=255)
                       cATATAACTTATCAGAAGCAAGAGACTATGCATGTATATTAGACGATGATATAATAGTAGAGTCGCCTATCACTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCATAATGTCGTTCAcatc                                                                                                              >  2:447788/1‑135 (MQ=255)
                          ataACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTC‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATa                                                                                                           >  2:18287/1‑135 (MQ=255)
                                     gAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGtcat                                                                                                <  1:549103/135‑1 (MQ=255)
                                       cggacgtagatatgCTTGTATATTCAAAGATGGTATAATAATAAAGTAGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGAA‑TTACT‑T‑TGCTAATCATATTCGTTCGCATCATAACACCAGTAATCAg                                                                                             >  1:230845/13‑135 (MQ=255)
                                       cggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAg                                                                                             >  2:502110/13‑135 (MQ=255)
                                       cggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAg                                                                                             >  2:604090/13‑135 (MQ=255)
                                       cggaagtagatatgCTTGTATATTCAAAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAg                                                                                             >  1:573169/13‑135 (MQ=255)
                                         gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTg                                                                                           >  2:356016/11‑135 (MQ=255)
                                         gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTg                                                                                           >  1:631284/11‑135 (MQ=255)
                                         gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTg                                                                                           <  1:285282/125‑1 (MQ=255)
                                         gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTg                                                                                           <  2:299730/125‑1 (MQ=255)
                                         gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTg                                                                                           <  2:46058/125‑1 (MQ=255)
                                         gaagtaagtatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTg                                                                                           <  2:396529/125‑1 (MQ=255)
                                          gagtagatatgCGTGTATATTCACAGATGGTATAGTAAGAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATATTCGTTCAAACCACAGCACCAGtcatcattag                                                                                          >  2:132183/10‑131 (MQ=255)
                                          aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGTGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATTATAGATCCAGTCATCAGTgg                                                                                          <  1:624293/126‑1 (MQ=255)
                                          aagtagatatgCTTGTATATTCACAAATGGTATAATAATAGAATCGCCAATCAATCAAGCGTCAATT‑‑GACGAAGAGAGGAGGAGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTgg                                                                                          >  1:22006/10‑135 (MQ=255)
                                           agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGAA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                                         >  2:200512/9‑135 (MQ=255)
                                           agtagatatgCTTGTATATTCACAGATGGAATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                                         >  1:679793/9‑135 (MQ=255)
                                            gtagatacgCTCGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACTTCTTAGCACCAGTCATCAGTGGcg                                                                                        <  1:75331/127‑2 (MQ=255)
                                              agatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                      <  2:81324/130‑1 (MQ=255)
                                              agatacgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                                      <  2:656785/129‑1 (MQ=255)
                                               gatatgCTTGTGTATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAAAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCCTTAACATCATAGGACCAGTAAGCAGTGGCtgtg                                                                                     >  2:293346/5‑135 (MQ=255)
                                                atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGAACCAGTCATCAGTGGCTGTGc                                                                                    >  1:653444/4‑135 (MQ=255)
                                                  gtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAAGCGTCAATATAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATATCCGTTACAATCATAGCACCAGTAACCAATGGATGTGcc                                                                                   >  2:333230/1‑135 (MQ=255)
                                                  atgCTTGTATATTCACCGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctg                                                                                  <  2:542028/134‑3 (MQ=255)
                                                    gCTTTTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TTCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgtt                                                                                <  2:229685/135‑5 (MQ=255)
                                                    gCTTGTATATTGATAGATGGTATAATAATAGAGTCGCCTATCTTTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGctgtt                                                                                <  2:240513/135‑5 (MQ=255)
                                                        gTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCg                                                                             >  1:239209/1‑135 (MQ=255)
                                                         tataTTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCATTCACAACATAGCACCAGTCATCAGTGGCTGTGCCATTGCGt                                                                            <  2:379031/135‑1 (MQ=255)
                                                          atattcacagatgttATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                                          <  2:144444/126‑3 (MQ=255)
                                                          atattcacagatggtATAATACTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGAACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                                          <  1:419867/126‑3 (MQ=255)
                                                            attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                                                                        <  1:565508/128‑2 (MQ=255)
                                                            attcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                                                                        <  1:416082/128‑2 (MQ=255)
                                                             ttcacagctggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                                                                       <  1:20191/124‑3 (MQ=255)
                                                             ttcacagatggtATAATAATAGGGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                                                                       <  2:112657/129‑6 (MQ=255)
                                                               tGCCGATGATATAATAGTAGAATCGACTATCTATAAGGAGTCAATTTAGAAGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAAATCATAGCAACAGTAATCAGTGGCTGTGCAATTGCGttttttt                                                                      >  1:29866/1‑135 (MQ=255)
                                                                 cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCCTTTTCGTTCACCTCATAGCACCAGTCATCAATGGCTGTGCTGTTGCGTATTATACtt                                                                   >  2:171275/3‑135 (MQ=255)
                                                                 cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatactt                                                                   >  1:618611/3‑126 (MQ=255)
                                                                 cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCAGTGCTGTTGCGTATTATACtt                                                                   >  1:446504/3‑135 (MQ=255)
                                                                  agatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTa                                                                  <  2:31700/134‑1 (MQ=255)
                                                                   gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAt                                                                 >  1:642194/1‑135 (MQ=255)
                                                                   gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAt                                                                 >  2:15507/1‑135 (MQ=255)
                                                                    attatatAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑GGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTAt                                                                 <  2:168534/132‑1 (MQ=255)
                                                                    atggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTTCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                <  2:388087/135‑1 (MQ=255)
                                                                    atggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                >  1:387110/1‑135 (MQ=255)
                                                                    atggtATAATAATAGAGTCACCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                >  1:572306/1‑135 (MQ=255)
                                                                     tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCGGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTTTTg                                                               >  2:324437/4‑135 (MQ=255)
                                                                     tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                               <  2:281859/132‑1 (MQ=255)
                                                                      ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                              <  1:442324/133‑1 (MQ=255)
                                                                      gggataataATTGAGTCGCCTTTCCCTCCGGCGTCAATT‑‑GACGAAGAGAGGCGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCTTAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtttg                                                              <  2:270520/132‑3 (MQ=255)
                                                                       gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGCTGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGttttttataaagtcgc                                                             <  2:439397/134‑11 (MQ=255)
                                                                          taataaTAGAGTCGCCTATCTCTCAGGCGGCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta                                                          >  2:558926/1‑133 (MQ=255)
                                                                           aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                         <  2:419064/135‑4 (MQ=255)
                                                                           aataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa                                                          <  2:308899/135‑1 (MQ=255)
                                                                           aataGTAGAGTCCCCTATCTCTCAGGCGGCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa                                                          <  2:166964/135‑1 (MQ=255)
                                                                             taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                       >  1:317741/4‑135 (MQ=255)
                                                                              aatagAGTCGCCTAACTCTCAGGCGTCAACT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                                      <  2:262532/133‑2 (MQ=255)
                                                                               gtagAGTCGCCTATCTCCCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTACTTTCGTTCACATCATAGCACCAGTACTCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAg                                                      >  2:457359/1‑135 (MQ=255)
                                                                               atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAggaaa                                                     <  1:181076/134‑5 (MQ=255)
                                                                                tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTCTTATACTTATTGGCttggtaaag                                                    >  2:361208/1‑127 (MQ=255)
                                                                                 agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGtcaacg                                                   >  2:371303/1‑130 (MQ=255)
                                                                                 agagTCGCCTATCTCTCAGGCGGCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGAc                                                    <  1:485628/135‑1 (MQ=255)
                                                                                  gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                  <  2:635484/135‑1 (MQ=255)
                                                                                   agTCGCCTATCTCTCAGGCGTCAAAT‑‑GACGAAGAGAGGAGATGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                 >  1:38623/1‑135 (MQ=255)
                                                                                    gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                >  1:335922/1‑135 (MQ=255)
                                                                                     tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                               >  1:523841/1‑134 (MQ=255)
                                                                                      cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                              >  1:578101/1‑133 (MQ=255)
                                                                                      cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGATGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                              >  1:113119/1‑133 (MQ=255)
                                                                                      cGCCTATCCTTCACGCGTCAATGTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TTATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTTTGCCATTGCTTTTTTTTCTTATTGGCTAAGTAGACGCAAt                                               <  1:536976/135‑1 (MQ=255)
                                                                                       gCCTTTCTCTCAGACGACAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                             >  1:287222/1‑132 (MQ=255)
                                                                                       gCCTCTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGCCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                             >  1:421919/1‑132 (MQ=255)
                                                                                       gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGTGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCCGTGGCTGTGCTGTTACGTATTATACTTTTTGGATTAGTAAATGCaacaa                                             >  2:580286/1‑132 (MQ=255)
                                                                                        ccTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCGTAGCACCAGTCATCAGTGGCTGTGCTATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATAc                                             <  1:275204/135‑1 (MQ=255)
                                                                                        ccTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATAc                                             >  1:544269/1‑135 (MQ=255)
                                                                                        ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                            >  2:57303/1‑131 (MQ=255)
                                                                                        ccTATCTCTCAGGCGTAAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑GTT‑TGCTAATCATTTTCGTCCACAGCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGACTTATTAAACGaaacaaa                                            >  2:101989/1‑131 (MQ=255)
                                                                                         cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACCCAAtcaat                                           >  2:482585/1‑131 (MQ=255)
                                                                                         cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                           >  1:502111/1‑130 (MQ=255)
                                                                                          tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGATGCATTAC‑T‑T‑TGCTAATAATTTTCATTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                          >  1:113006/1‑129 (MQ=255)
                                                                                           aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGTTGTTGCGTATTATATTTATTGGTTTAGTAAACGCaacaaataa                                         <  1:124317/135‑8 (MQ=255)
                                                                                             ctctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAt                                        >  1:258341/1‑135 (MQ=255)
                                                                                             ctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaacaaatg                                       >  1:651009/1‑126 (MQ=255)
                                                                                             ctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                       >  2:454315/1‑126 (MQ=255)
                                                                                              tctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTGTTATACTTATTGGCTTAGTAAACGCaacaaataatta                                      >  1:92429/1‑125 (MQ=255)
                                                                                               ctcAGGCGTCAATTTAGACACAGAGAGAAAGAGTA‑AAA‑G‑A‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAAAAg                                      >  1:167644/1‑135 (MQ=255)
                                                                                               ctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                     >  1:71660/1‑124 (MQ=255)
                                                                                               ctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATAATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                     >  1:666948/1‑124 (MQ=255)
                                                                                               ctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                     >  1:72899/1‑124 (MQ=255)
                                                                                               ctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                     >  1:31302/1‑124 (MQ=255)
                                                                                               ctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                     >  1:74924/1‑124 (MQ=255)
                                                                                                tcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGGTTAGTAAACGCaacaaataattaat                                    >  1:367019/1‑123 (MQ=255)
                                                                                                    gCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCTGTGGCTGTGCCATTGCGTTTTTTTCGTATTGGCTCTGTTGATACAAGACAAAATAGGTggg                                 <  1:461015/135‑3 (MQ=255)
                                                                                                    gCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGGGAc                                 <  1:211241/135‑1 (MQ=255)
                                                                                                            ttAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCGTCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGcc                         <  1:403659/135‑1 (MQ=255)
                                                                                                                  gCAGAGCGGAGGTGTA‑TAA‑G‑G‑TGATCCTTATTTCCGTTCCCATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCa                   <  1:169684/135‑1 (MQ=255)
                                                                                                                           aggTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATc          <  2:239209/135‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
CGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACT  >  CP000730/1929733‑1929998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑