New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2440041 =	105 (0.800)	4 (0.030)	4/270	9.1	3.8%	intergenic (+2/+64)	USA300HOU_2302/glvC	hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
	?	CP000730	2440099 =	107 (0.890)					intergenic (+60/+6)	USA300HOU_2302/glvC	hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGTATCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2440194‑2440041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTC  >  CP000730/2440099‑2440245                                                                                                                                                                                                                                                                                                                 AGTATCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTG                                                                                                                                                           >  2:714695/1‑148    ATCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT                                                                                                                                                        <  1:346567/148‑1    ATCCAAGTTGTAGTAGGTATGACACTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT                                                                                                                                                        <  1:505020/148‑1     TCCAAGTTGTAGTAGTTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT                                                                                                                                                       >  1:886554/1‑148     TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGACGAATTTGAACAACTGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT                                                                                                                                                       <  2:639972/148‑1     TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCTTTGTAAATGATCATCGTATA‑‑GATGTGTCTT                                                                                                                                                       <  2:1029260/148‑1     TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT                                                                                                                                                       <  1:144897/148‑1     TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT                                                                                                                                                       <  2:423957/148‑1     TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT                                                                                                                                                       >  1:824842/1‑148     TCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATAATCGTATA‑‑GATGTGTCTT                                                                                                                                                       >  2:2716/1‑148     TCCAAGTTGGAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT                                                                                                                                                       <  1:889993/148‑1       aAAGTTGTAGTAGGTAAGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT                                                                                                                                                     <  2:373011/147‑1       CAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGAATTTGAACAATTGGGTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATTCGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT                                                                                                                                                     <  1:1289651/148‑1                                             AGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGCTAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATAATC‑GCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGTACGATTGATCCTCAACC                                                                                                                >  2:243181/1‑148                                                                                            ACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACTAACTTTTGTTACTGTCTTACCTACTACA                                                                >  2:292949/1‑148                                                                                                   AAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGA                                                         >  2:1177738/1‑148                                                                                                                                        TCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTG                    <  1:1177738/148‑1                                                                                                                                                 GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGC             >  1:221382/1‑148                                                                                                                                                 GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTGGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGC             >  2:704442/1‑148                                                                                                                                                  ATGTGTCTTTGTTTGTATTATTTATCTTCGGAGCATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGTATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCG            <  2:38800/148‑1                                                                                                                                                   TGTTTCTTTTTTTTTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGT           <  2:625363/148‑1                                                                                                                                                   TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGT           <  2:411278/148‑1                                                                                                                                                     TGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGA         <  2:37174/148‑1                                                                                                                                                     TGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGA         <  1:398596/148‑1                                                                                                                                                      GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA        >  1:829006/1‑148                                                                                                                                                      GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA        <  1:37222/148‑1                                                                                                                                                      GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA        >  1:293644/1‑148                                                                                                                                                      GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA        >  1:1244310/1‑148                                                                                                                                                      GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAA        >  1:379321/1‑148                                                                                                                                                      GTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCATTGTGCCATTTGTGGATGCTTGAA        >  2:1252164/1‑148                                                                                                                                                      GTCTTTTTTTGTATTATTTATATTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACATACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCAATTTGTTGATGCGTGAA        >  1:464008/1‑148                                                                                                                                                        CTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGCTACTCTTACCACTCTTTACTAATCCGTGTGCCAGTTGTTGATGAGTGAAAT      >  2:320960/1‑148                                                                                                                                                          TTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATAT    >  1:364721/1‑148                                                                                                                                                           TTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCACATGCTTCCCGAACGTGGGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATT   <  1:1385330/148‑1                                                                                                                                                            TTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTC  <  1:1376768/148‑1                                                                                                                                                            TTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCACCTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTC  <  1:674489/148‑1                                                                                                                                                                                                                                                                                                                 AGTATCCAAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2440194‑2440041 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGAAATATTC  >  CP000730/2440099‑2440245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.