Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9170CT66.8% 416.1 / inf 376intergenic (‑1000/‑168)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (60/64);  new base T (144/106);  total (205/171)
Fisher's exact test for biased strand distribution p-value = 9.89e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 379 total aligned reads displayed.

AAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCT  >  CP000730/1929771‑1930064
                                                                                                                                                       |                                                                                                                                                          
aaGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACTTCATAGCACCGGTCATCAGTGGCGGTGCCa                                                                                                                                                           >  1:501249/1‑148 (MQ=255)
aaGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCa                                                                                                                                                           >  1:158926/1‑148 (MQ=255)
aaGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTAGTCCACATCATAGCACCAGTCATCAGTGGCTGTGCCa                                                                                                                                                           >  1:532638/1‑148 (MQ=255)
   gaagtagatatgCTTGTATATTCAGAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACAAGTCATCAGTGGCTGTGCTGTTGc                                                                                                                                                       >  1:701677/11‑148 (MQ=255)
     agtagataggCTTGTATATGCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                                                                                                     <  1:594270/139‑1 (MQ=255)
      gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                                                                                                    <  2:174136/141‑2 (MQ=255)
      gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTC‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                                                                                                    <  2:1396465/141‑2 (MQ=255)
      gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                                                                                                    <  2:1010961/141‑2 (MQ=255)
       tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                                                                                                                   <  2:808053/142‑3 (MQ=255)
       tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                                                                                                                   <  1:1192497/142‑3 (MQ=255)
       tGACTGTGCTTGTATATTTGCCGATGAGATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑GAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACAAGTCATCAGTGGCTGTGCCATTGCGtt                                                                                                                                                    >  2:650755/1‑148 (MQ=255)
         gatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtatta                                                                                                                                                 <  2:885730/144‑5 (MQ=255)
         aCTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGtttt                                                                                                                                                  <  1:205989/148‑1 (MQ=255)
          cTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGACGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttttt                                                                                                                                                 >  2:353833/1‑148 (MQ=255)
          atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                                                                                                                                                <  2:1045901/145‑6 (MQ=255)
          atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattat                                                                                                                                                >  1:1151390/4‑146 (MQ=255)
           tatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGttttata                                                                                                                                               >  1:898736/3‑145 (MQ=255)
             tgCTTGTATATTTGACGCTGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTc                                                                                                                                              <  2:739260/148‑1 (MQ=255)
              gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACtt                                                                                                                                            >  1:411214/1‑148 (MQ=255)
               cTTGTATATTCACAGATGGTATAATAATAGAGGCGCCTATCTGTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTa                                                                                                                                           >  2:1369072/1‑148 (MQ=255)
                 tGTATATTCACAGAAGGTATAAAAAAAGAGTCGACTATATCTCAGGGTTCAAGT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTACTCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAtt                                                                                                                                         <  2:380749/148‑1 (MQ=255)
                   tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                                       >  1:964006/11‑148 (MQ=255)
                   tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATAATTATTgg                                                                                                                                       >  2:1109403/11‑148 (MQ=255)
                   tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                                       >  1:1004779/11‑148 (MQ=255)
                   tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGACAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCTTTTTCGTTCACATCATAGCACCAGTGATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                                       <  1:909138/138‑1 (MQ=255)
                    atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGTCGTCAATT‑‑GAAGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                      <  2:1094417/139‑1 (MQ=255)
                    atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGGGTCACTT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                      <  1:609988/139‑1 (MQ=255)
                    atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                      <  2:1234546/139‑1 (MQ=255)
                     tattcagagatggtATAATACTAGAGTCGCCTATCTATCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                     <  2:987593/140‑1 (MQ=255)
                     tattcaaagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                     <  1:4463/140‑1 (MQ=255)
                      attcacagatggtATAATAATAGAGTCGCCTATCTCTCCGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                                                                                                                    <  2:706079/141‑2 (MQ=255)
                      atTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCt                                                                                                                                     >  1:197238/1‑148 (MQ=255)
                       ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta                                                                                                                                   <  1:453307/142‑3 (MQ=255)
                        tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGCAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                                                                                                                  >  2:56653/6‑148 (MQ=255)
                        tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCCT‑TAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATCATACTTATTGGCTTAg                                                                                                                                  >  1:1266388/6‑148 (MQ=255)
                        tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAACACCAGTCATCAGTGGCTGTGCTGTTGCGTATTACACTTATTGCCTTAg                                                                                                                                  >  2:965468/6‑148 (MQ=255)
                         tGCCGATGATACAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                                                                                                                  >  1:521209/1‑148 (MQ=255)
                         cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                 >  2:899516/5‑148 (MQ=255)
                           ccGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTa                                                                                                                                <  1:1388960/148‑1 (MQ=255)
                           cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGCCTTAGTaa                                                                                                                               >  2:215937/3‑147 (MQ=255)
                             gatgatATAATTGTAGAGTCGCCTAGCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGa                                                                                                                              <  2:443053/148‑1 (MQ=255)
                              agggtataATATTAGAGTCGCCTATCTATCAGGCGTCAA‑‑TGGACAAAGCGAGGAGGGG‑AATTAC‑T‑C‑TGCTAATCATTTTCGTGCCCATCATAGCACCAGTCATCAGTGGATGTGCTGTTGCGTATTATACTTATTGGGTTAGTaaagg                                                                                                                            >  2:529424/5‑144 (MQ=255)
                               tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCCACAGTGGCTTTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                           >  1:1315584/4‑148 (MQ=255)
                               tgatATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGCGGAGGCG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACg                                                                                                                            <  2:498929/148‑1 (MQ=255)
                                tgtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a                                                                                                                      <  2:621248/146‑1 (MQ=255)
                                ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a                                                                                                                      <  2:1319986/146‑1 (MQ=255)
                                ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a                                                                                                                      <  1:1364429/146‑1 (MQ=255)
                                ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCGTAGTAAACGC‑‑‑‑a                                                                                                                      <  2:588694/146‑1 (MQ=255)
                                 gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aa                                                                                                                     <  2:949644/147‑1 (MQ=255)
                                 gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAACT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTCCGTTCACATCATAGCACCAGTCATCAGTGGCCGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aa                                                                                                                     <  1:303818/147‑1 (MQ=255)
                                 atatAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑a                                                                                                                      <  2:1062418/148‑1 (MQ=255)
                                 atatAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑GA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑a                                                                                                                      <  1:39013/148‑1 (MQ=255)
                                 atatAAGAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGGGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑a                                                                                                                      <  1:733715/148‑1 (MQ=255)
                                    taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaa                                                                                                                  >  1:1276598/1‑145 (MQ=255)
                                     aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaa                                                                                                                 <  1:576278/148‑5 (MQ=255)
                                     aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaa                                                                                                                 <  2:854445/148‑5 (MQ=255)
                                     aataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTATTATTGGCTAAGTAGAAGC‑‑‑‑AATAc                                                                                                                  >  2:1018616/1‑148 (MQ=255)
                                      ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaat                                                                                                                <  1:344391/148‑6 (MQ=255)
                                      ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACACCATAGCACCAGTCACCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaact                                                                                                                >  2:306246/1‑143 (MQ=255)
                                       taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTTAACGC‑‑‑‑accaaata                                                                                                               >  2:783465/4‑141 (MQ=255)
                                       taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaata                                                                                                               <  2:766770/145‑7 (MQ=255)
                                       taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaata                                                                                                               >  1:64634/4‑142 (MQ=255)
                                        aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataa                                                                                                              <  1:870720/146‑8 (MQ=255)
                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataat                                                                                                             >  1:661309/2‑140 (MQ=255)
                                         atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataat                                                                                                             >  1:232035/2‑140 (MQ=255)
                                          tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataatt                                                                                                            >  1:400133/1‑139 (MQ=255)
                                           agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aaaaaataatta                                                                                                           >  2:300057/1‑138 (MQ=255)
                                            gagTCGCCTATCTCTCAGGCGTCAGTT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaatagttaa                                                                                                          >  1:1105980/1‑137 (MQ=255)
                                            gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaa                                                                                                          <  1:1136834/148‑12 (MQ=255)
                                            gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaa                                                                                                          >  1:1292817/1‑137 (MQ=255)
                                            gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaa                                                                                                          >  1:270065/1‑137 (MQ=255)
                                            gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaa                                                                                                          >  1:1332809/1‑137 (MQ=255)
                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataattaat                                                                                                         >  2:153842/1‑136 (MQ=255)
                                             agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTAAACTTATTGGCTTAGTAAACGC‑‑‑‑aacaaataatgaat                                                                                                         >  2:662818/1‑136 (MQ=255)
                                               tCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTg                                                                                                        <  2:1206619/148‑1 (MQ=255)
                                                cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCGTAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTGAGTAAACGC‑‑‑‑AACACAGAAttaataga                                                                                                      >  1:488347/1‑141 (MQ=255)
                                                           cAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑Gc                                                                                         <  1:634674/148‑1 (MQ=255)
                                                                                   ggaggTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTAcc                                                                 <  2:1273074/148‑1 (MQ=255)
                                                                                   ggaggTG‑TA‑TAA‑G‑G‑GGATGCTTATTTTCGTTCACATCATAGCACCAGTTATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTAcc                                                                 <  2:819313/148‑1 (MQ=255)
                                                                                     aggTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGc                                                               >  2:1259958/1‑148 (MQ=255)
                                                                                               aa‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTTTTTTTTTTTTAGTAGACGC‑‑‑‑AATACAAAATATGTGACA‑TAT‑AGCC‑GCTCCAATAAAAATCCCCTCACTACCGCCAATAGTg                                                       >  2:922362/1‑148 (MQ=255)
                                                                                               aa‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGGCA‑TAT‑AGCC‑GCACCAATAAACATCCCCTCACTACCCCAACAAGTg                                                       >  2:259383/1‑148 (MQ=255)
                                                                                               aa‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTCCGGCAAATAGTg                                                       >  1:1251243/1‑148 (MQ=255)
                                                                                               aa‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTCACGCAAATAGTg                                                       >  1:938978/1‑148 (MQ=255)
                                                                                                a‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAATTAGGGa                                                      >  2:1216237/1‑148 (MQ=255)
                                                                                                a‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCGTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCCAATAGTGa                                                      >  1:542521/1‑148 (MQ=255)
                                                                                                    g‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATACACCCACTACCGCAAAAAgggggg                                                    >  2:1346132/1‑143 (MQ=255)
                                                                                                         tGCTTATTTTCGTTCACATCATAGCACCACTTATCTCCAGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAt                                                >  1:1398272/1‑148 (MQ=255)
                                                                                                               ttttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAGTAGTGAGGGGATTGgtgt                                          >  1:21147/1‑148 (MQ=255)
                                                                                                               ttttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGgtgt                                          >  1:1072133/1‑148 (MQ=255)
                                                                                                                      tCACATCATAGCACCAGTCATCAGTTGCGGTGCCATTGCGTTTTTTTCTTATTAGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGGCA‑TAT‑AGCC‑ACAGCAATTAAAATCCCCTCACTACCGCAAATAGTGAGGGGGTTGGTGTATACGTa                                   >  1:1041243/1‑148 (MQ=255)
                                                                                                                      tCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GTACCAATATATATTCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTa                                   <  2:1288071/148‑1 (MQ=255)
                                                                                                                       cacaTCATAGCACCAGTCATCAGTGGCGGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTaa                                  <  2:453593/148‑1 (MQ=255)
                                                                                                                          atgatAGCACCAGTCAGCCGTGGCTGTGCCATTGCGTTTTTTTCTTGTTGGCTAAGTAGACGC‑‑‑‑ACTACAAAATAGGTGACA‑TGT‑AGCC‑GCACCAATAAAAATCCCCTCCCTATCCCAAGTAGTGAGGGGATTGGTGTATAAGTAAATa                               <  2:1359830/145‑1 (MQ=255)
                                                                                                                           tcatAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAAATAATTAATAGGCGACTTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGgtgcattaatt                                   >  1:829468/1‑140 (MQ=255)
                                                                                                                                 cACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAttt                        >  1:80905/1‑148 (MQ=255)
                                                                                                                                 cACCAGTCATCAGTGGCTGTGCCATTGAGTTTGGTTCGTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTCttt                        >  1:683382/1‑148 (MQ=255)
                                                                                                                                    cAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTTTTTTTTTTTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TTT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATCGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCg                     >  2:1165345/1‑148 (MQ=255)
                                                                                                                                           caGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCtt              >  2:1182330/1‑148 (MQ=255)
                                                                                                                                                       cATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCt  >  1:479764/1‑148 (MQ=255)
                                                                                                                                                       |                                                                                                                                                          
AAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑AATACAAAATAGGTGACA‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCT  >  CP000730/1929771‑1930064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑