Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9250TA63.5% 309.2 / inf 322intergenic (‑1008/‑160)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (56/61);  new base A (132/72);  total (189/133)
Fisher's exact test for biased strand distribution p-value = 4.62e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.81e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 333 total aligned reads displayed.

TGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTT  >  CP000730/1929778‑1930071
                                                                                                                                                       |                                                                                                                                                              
  aCTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGtttt                                                                                                                                                              <  1:205989/148‑1 (MQ=255)
   atatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GAAGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCGGTGGCATTGCAGTTGCGtattat                                                                                                                                                            >  2:1274237/4‑146 (MQ=255)
        cTTGTATATTCACAGATGGTATAATAATAGAGGCGCCTATCTGTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTa                                                                                                                                                       >  2:1369072/1‑148 (MQ=255)
         ttGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTa                                                                                                                                                       <  2:216312/148‑1 (MQ=255)
          tGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTAt                                                                                                                                                      <  2:68054/148‑1 (MQ=255)
           gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTg                                                                                                                                                    <  2:1108193/148‑1 (MQ=255)
            tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                                                   <  1:692482/138‑1 (MQ=255)
            tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                                                   >  1:1409249/11‑148 (MQ=255)
            tatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTgg                                                                                                                                                   >  1:1004779/11‑148 (MQ=255)
             atattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGGGTCACTT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                                                                                                                  <  1:609988/139‑1 (MQ=255)
              tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                                 >  2:462420/9‑148 (MQ=255)
              tattcacagatgggataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                                 <  2:731032/134‑1 (MQ=255)
              tattcaaagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCt                                                                                                                                                 <  1:4463/140‑1 (MQ=255)
               atTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCt                                                                                                                                                 >  1:197238/1‑148 (MQ=255)
                tttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTa                                                                                                                                                >  2:1171482/1‑148 (MQ=255)
                ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTTTACTTATTGGCtta                                                                                                                                               >  1:576672/7‑146 (MQ=255)
                ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta                                                                                                                                               <  1:453307/142‑3 (MQ=255)
                ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATAATAGCCCCAGTCATCAGGGGCTGTGCTGTTGCCTATTCTGCTTATTGGCtta                                                                                                                                               >  2:770224/7‑146 (MQ=255)
                 tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGCAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                                                                                                                              >  2:56653/6‑148 (MQ=255)
                 tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTCC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATCATACTTATTGGCttag                                                                                                                                              >  1:1266371/6‑145 (MQ=255)
                 tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                                                                                                                              >  1:508159/6‑148 (MQ=255)
                 tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAACACCAGTCATCAGTGGCTGTGCTGTTGCGTATTACACTTATTGCCTTAg                                                                                                                                              >  2:965468/6‑148 (MQ=255)
                 tcacaccgggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGGGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATCGGCTTAg                                                                                                                                              >  2:1222282/11‑148 (MQ=255)
                  tGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCGGAGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTact                                                                                                                                              >  1:521296/1‑146 (MQ=255)
                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                                                                                                                             >  2:899516/5‑148 (MQ=255)
                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTCTTGGCTTAGt                                                                                                                                             >  2:1360129/5‑148 (MQ=255)
                   acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                                                                                                                            >  2:1207503/4‑148 (MQ=255)
                   acagatggtATAATAATAGAGTCGCCTATCTATCAGGCGTCAATT‑‑GACGAAGCGAGGAGGTGCG‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCACTCATCAGTGGCTGTGGTGTTGCGTATTATACTTATTGGCTTAGtg                                                                                                                                            >  2:170560/4‑147 (MQ=255)
                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCCACAGTGGCTTTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                                       >  1:1315584/4‑148 (MQ=255)
                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGc                                                                                                                                       <  2:985080/145‑1 (MQ=255)
                         ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTATTCATTTTCGTTCACATCATTGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a                                                                                                                                  <  2:818380/146‑1 (MQ=255)
                         ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a                                                                                                                                  <  1:53515/146‑1 (MQ=255)
                         ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a                                                                                                                                  <  2:1319986/146‑1 (MQ=255)
                         ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCGTAGTAAACGC‑‑‑‑a                                                                                                                                  <  2:588694/146‑1 (MQ=255)
                          gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑a                                                                                                                               <  2:949644/147‑1 (MQ=255)
                          gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAACT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTCCGTTCACATCATAGCACCAGTCATCAGTGGCCGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑a                                                                                                                               <  1:303818/147‑1 (MQ=255)
                          atatAATAGTAGAGTCGCCTGTCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGGA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑a                                                                                                                                  <  2:377579/148‑1 (MQ=255)
                          atatAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑a                                                                                                                                  <  2:445133/148‑1 (MQ=255)
                          atatAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑a                                                                                                                                  <  2:1017163/148‑1 (MQ=255)
                           tataATAATAGAGTCGCCTATCTGTCAGGCGTCAATT‑‑GACGGAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaagcgacac                                                                                                                                    >  2:885984/1‑140 (MQ=255)
                           tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATACTAGCACCAGTATTCTCTGTCTTTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑ac                                                                                                                              <  1:1393056/148‑2 (MQ=255)
                             taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaa                                                                                                                            <  1:136555/148‑4 (MQ=255)
                              tataataGAGGCGCCTATCTCTCAGGGGTCAATT‑‑GACGAAGTGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaa                                                                                                                           <  2:821004/147‑5 (MQ=255)
                              aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaa                                                                                                                           <  2:854445/148‑5 (MQ=255)
                              aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaa                                                                                                                           <  1:1122844/148‑5 (MQ=255)
                              aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaa                                                                                                                           <  2:744900/148‑5 (MQ=255)
                               ctaatagAGTCGCCTATCTCTCAGGCGACAATT‑‑GAAGAAGAGAGGCGGTGCATTAC‑T‑T‑TGCTAATAATTCTAGTTCACATCATAGAACCCGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGcgacaaaa                                                                                                                                >  2:1092864/5‑141 (MQ=255)
                               ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaagt                                                                                                                          >  2:433621/5‑143 (MQ=255)
                               ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaat                                                                                                                          <  1:344391/148‑6 (MQ=255)
                               ataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACACCATAGCACCAGTCACCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaact                                                                                                                          >  2:306246/1‑143 (MQ=255)
                                taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaata                                                                                                                         >  2:516741/4‑142 (MQ=255)
                                taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATAATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaata                                                                                                                         >  2:619023/4‑142 (MQ=255)
                                taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAACAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaata                                                                                                                         <  1:899235/145‑7 (MQ=255)
                                 agtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACaa‑‑a                                                                                                                       >  1:600478/1‑148 (MQ=255)
                                 aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataa                                                                                                                        <  1:870720/146‑8 (MQ=255)
                                 aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataa                                                                                                                        >  2:1153652/3‑141 (MQ=255)
                                 aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataa                                                                                                                        >  1:648036/3‑141 (MQ=255)
                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGCGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGG‑‑‑‑a‑‑acaaataat                                                                                                                       >  1:547798/2‑140 (MQ=255)
                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataat                                                                                                                       >  1:232035/2‑140 (MQ=255)
                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataat                                                                                                                       >  1:1102698/2‑140 (MQ=255)
                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataat                                                                                                                       >  2:123719/2‑140 (MQ=255)
                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataat                                                                                                                       >  1:661309/2‑140 (MQ=255)
                                  atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTCGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataat                                                                                                                       >  1:489763/2‑140 (MQ=255)
                                   tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataatt                                                                                                                      >  1:400133/1‑139 (MQ=255)
                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataatta                                                                                                                     >  1:395842/1‑138 (MQ=255)
                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑aaaaataatta                                                                                                                     >  2:300057/1‑138 (MQ=255)
                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTCTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataatta                                                                                                                     >  1:816300/1‑138 (MQ=255)
                                     gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaa                                                                                                                    >  1:1292817/1‑137 (MQ=255)
                                     gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaa                                                                                                                    >  2:54758/1‑137 (MQ=255)
                                     gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaa                                                                                                                    >  1:270065/1‑137 (MQ=255)
                                     gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaa                                                                                                                    >  1:1332809/1‑137 (MQ=255)
                                     gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaa                                                                                                                    >  1:1157775/1‑137 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAgg                                                                                                                  >  2:1039214/1‑148 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaattattaat                                                                                                                   >  2:32986/1‑136 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                                   >  1:115079/1‑136 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                                   <  1:917685/148‑13 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                                   >  2:153842/1‑136 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTAAACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataatgaat                                                                                                                   >  2:662818/1‑136 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                                   >  1:1267237/1‑136 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGC‑‑‑‑a‑‑acaaataattaat                                                                                                                   >  1:990815/1‑136 (MQ=255)
                                         cGCCTATCTCTCAGGCGTCAATTTAGACGTAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGa                                                                                                               >  1:732757/1‑148 (MQ=255)
                                          gCCTATCTCTCAGGCGTCAATTTAGACGCGGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGGCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑ACTAGGTGaa                                                                                                              >  2:1293513/1‑147 (MQ=255)
                                                    cAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑Gc                                                                                                <  1:634674/148‑1 (MQ=255)
                                                                         agagGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACCC‑‑‑‑A‑‑ATACAA‑‑CATAGGTGCC‑A‑TAT‑AGCC‑GCACCATTAACAATCACCTCAca                                                                           >  2:631922/1‑147 (MQ=255)
                                                                                       aa‑G‑G‑TGATGCTTATTTTCGTTCACATCGTAGCACCAGTCATCAGTGGCTGTGGCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTg                                                              >  1:771214/1‑148 (MQ=255)
                                                                                       aa‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTTTTTTTTTTTTAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATATGTGAC‑A‑TAT‑AGCC‑GCTCCAATAAAAATCCCCTCACTACCGCCAATAGTg                                                              >  2:922362/1‑148 (MQ=255)
                                                                                       aa‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGGC‑A‑TAT‑AGCC‑GCACCAATAAACATCCCCTCACTACCCCAACAAGTg                                                              >  2:259383/1‑148 (MQ=255)
                                                                                       aa‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTCCGGCAAATAGTg                                                              >  1:1251243/1‑148 (MQ=255)
                                                                                       aa‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTCACGCAAATAGTg                                                              >  1:938978/1‑148 (MQ=255)
                                                                                            g‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATACACCCACTACCGCAAAAAgggggg                                                           >  2:1346132/1‑143 (MQ=255)
                                                                                                    ttAGTTTCGTTTACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTgg                                                    <  2:1190258/148‑1 (MQ=255)
                                                                                                       ttttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGgtgt                                                 >  1:1072133/1‑148 (MQ=255)
                                                                                                          tCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGtata                                              >  1:209680/1‑148 (MQ=255)
                                                                                                              tCACATCATAGCACCAGTCATCAGTTGCGGTGCCATTGCGTTTTTTTCTTATTAGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGGC‑A‑TAT‑AGCC‑ACAGCAATTAAAATCCCCTCACTACCGCAAATAGTGAGGGGGTTGGTGTATACGTa                                          >  1:1041243/1‑148 (MQ=255)
                                                                                                                  atcatAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAGGC‑‑‑‑AACAAATAATTAATAGGCGACTT‑TATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGGTGcattaaa                                           >  1:426204/1‑144 (MQ=255)
                                                                                                                   tcatAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCAACAA‑‑ATAATT‑‑AATAGGCGAC‑TTTATAAGCCAGCATCGA‑AAAAATCCCCACACTACTGC‑AATAGTGTGGGGATTGgtgcattaatt                                          >  1:829468/1‑140 (MQ=255)
                                                                                                                           caaGTCATCATGGGCTGTGCCAGTGCGTTTTTTTCCTATTGGCGAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCA‑GCACCAATAAAAATTCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTc                             <  1:482516/146‑1 (MQ=255)
                                                                                                                                 atcaGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGCGGGGATTGGTGTATAAGTAAATACTTATTTTCGTAGta                       >  2:1408996/1‑147 (MQ=255)
                                                                                                                                              ccATTGCGTTTTTTTTTTTTTGTCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGc          >  2:1263790/1‑148 (MQ=255)
                                                                                                                                                      tttttttCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAttttt  <  2:800239/148‑1 (MQ=255)
                                                                                                                                                       |                                                                                                                                                              
TGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGC‑‑‑‑A‑‑ATACAA‑‑AATAGGTGAC‑A‑TAT‑AGCC‑GCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTT  >  CP000730/1929778‑1930071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑