Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 1,513,930 A→T L413F (TTA→TTT)  USA300HOU_1379 → hypothetical membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,513,9300AT100.0% 277.3 / NA 87L413F (TTA→TTT) USA300HOU_1379hypothetical membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (40/47);  total (40/47)

AATCATTAATTTATTTGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTAATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAATTTACAAAATGATT  >  CP000730/1513786‑1514073
                                                                                                                                                |                                                                                                                                               
aaTCATTAATTTATTTGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTAtt                                                                                                                                              <  2:1103597/148‑1 (MQ=255)
   cagtAATGTATTTGTATGTAGCGCGTTATTAGTAGCCATTGGCATGGGGTTTGTCTCATGTATAAAGCATACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTa                                                                                                                                           <  2:247633/145‑1 (MQ=255)
   cATTAATTTATTTTTAGGTAGCGCTTGATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTa                                                                                                                                           <  2:247568/148‑1 (MQ=255)
   cATCAATTTATTTTTATGTCTTGCTTTATGAGGAGCCAATGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTATAAAAAAAAAAAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTa                                                                                                                                           <  2:278339/148‑1 (MQ=255)
     tttctttatttGTTTTTATTGTTTGATGAGTAGCAAATGGCATGAGGTTTGTCTCTTAGATAAAGAGAACAAAAAAGACTGCAATTATAGTATAAAAAAAAAAAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTAtt                                                                                                                                         <  2:343823/144‑1 (MQ=255)
     ttAATTTATTTGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTAtt                                                                                                                                         <  1:435690/148‑1 (MQ=255)
     taaaTTTATTAGTGTGTTTCGCTTTATGAGTAGCAATGGGCACGGGTTTTGTCCCGTGGATAAAGAGTACAAAAAATACTGCAATTAAAGTACAAAAAAAAAAAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTAtt                                                                                                                                         <  2:1404961/146‑1 (MQ=255)
      tAATTTATTTGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTa                                                                                                                                        >  1:1212970/1‑148 (MQ=255)
      tAATTTATTTGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTa                                                                                                                                        >  1:246259/1‑148 (MQ=255)
       aaTTTATTTGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTAGAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATTTATATCACTAATAATATATTCTATTTTATTAg                                                                                                                                       >  2:786914/1‑148 (MQ=255)
       aaTTTATTTGGATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAGGCGTACAAAAAATACTGCAATAAAAGTACAGCATCGCGTAAAAAAACCAGCATCTATATCACACATAATATGGTTTATTATATTAg                                                                                                                                       >  2:588740/1‑148 (MQ=255)
        atttatttGTATGTATCGCTTTATAAGAAGCCATTGGCATGGGGTTAGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTCTTAgg                                                                                                                                      >  1:785820/1‑148 (MQ=255)
         tttatttGTATGTTTCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTTGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGa                                                                                                                                     <  1:322557/148‑1 (MQ=255)
          ttatttGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGat                                                                                                                                    >  1:566849/1‑148 (MQ=255)
          ttatttGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGat                                                                                                                                    >  1:300937/1‑148 (MQ=255)
             tttGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGattat                                                                                                                                 <  1:529049/148‑1 (MQ=255)
             tttGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGattat                                                                                                                                 >  1:48015/1‑148 (MQ=255)
             tttGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGGTTTATTGTATTAGGattat                                                                                                                                 >  2:1383757/1‑148 (MQ=255)
             tttGTATGTATCGCTTTATTAGTAGACATCGGCATGGGGTTTGTCTCTTGGGTAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAGAACAAGCATCTATATCACTCACAATATGTTTTATTGTATTAGGattat                                                                                                                                 >  2:915791/1‑148 (MQ=255)
             tttGTATGTATCGCTTTAATAGGAGCAATTGGCATGGGGTTTGTCTCTTAGATAAAGCATGCAAACAATACTGCAATAAAAGTACCAAAAAAAATAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGattat                                                                                                                                 <  2:903964/148‑1 (MQ=255)
                 tatgtatCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAAt                                                                                                                             >  1:684848/1‑148 (MQ=255)
                    gtatCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGcc                                                                                                                          >  1:268016/1‑148 (MQ=255)
                    gtatCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTGGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGTATTATTAATGcc                                                                                                                          <  2:165402/148‑1 (MQ=255)
                      atCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCat                                                                                                                        >  2:34964/1‑148 (MQ=255)
                         gCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCattat                                                                                                                     <  2:176855/148‑1 (MQ=255)
                          cTTTTTTAGTAGCCATTGGCATGGGGTTTGTCTCTTTGATAAAGCGTACAAAAAATACTGCAATATAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCattatt                                                                                                                    <  2:1162059/148‑1 (MQ=255)
                          cTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGAGAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATAACACGCATAATATGTTTTATTGTATTAGGATTATTAATGCCattatt                                                                                                                    <  2:926111/148‑1 (MQ=255)
                           tttATTAGTAGCCATTGGAATGGGGTTTGAATCTTGGATCAAGTGTATAGAAAATTCTTCAATAAAAGTACTACAACGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTAttt                                                                                                                   >  2:278018/1‑148 (MQ=255)
                           tttATGAGTAGCCATTGGCATCGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATTTCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTAttt                                                                                                                   <  1:691679/148‑1 (MQ=255)
                            ttattaGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTTCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATCGTATTAGGATTAATAATGCCATTATTTg                                                                                                                  <  1:884225/148‑1 (MQ=255)
                              attaGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGa                                                                                                                <  1:62270/148‑1 (MQ=255)
                                   tagCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAACAACCAGCATCTATATCACTATTAATGTGTTTTATTGTATTAGGATTATTAATGCACTTATTTGGATTAtt                                                                                                           >  1:108841/1‑147 (MQ=255)
                                   tagCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCGTAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATc                                                                                                           >  2:923275/1‑148 (MQ=255)
                                   tagCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTGGGATTATTAATGCCATTATTTGGATTAtt                                                                                                           >  2:1311733/1‑147 (MQ=255)
                                     gCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCAc                                                                                                         <  1:4338/148‑1 (MQ=255)
                                                 gggTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTAt                                                                                             <  1:1287438/148‑1 (MQ=255)
                                                 gggTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTAt                                                                                             <  1:741961/148‑1 (MQ=255)
                                                 gggTTTGTCTCCTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTAt                                                                                             <  1:9344/148‑1 (MQ=255)
                                                   gTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGCTTATTGATTCCATTATTTGGATTATCACTTATCCTTGTAttt                                                                                           <  2:1293645/148‑1 (MQ=255)
                                                       gTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATaa                                                                                       <  2:740435/148‑1 (MQ=255)
                                                       gTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATaa                                                                                       <  2:307359/148‑1 (MQ=255)
                                                       gTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGCATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATaa                                                                                       <  2:925618/148‑1 (MQ=255)
                                                        tctcTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAAt                                                                                      <  1:1293056/148‑1 (MQ=255)
                                                           ctTGGATAAAGCGTACAAAAAAGACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGa                                                                                   <  1:378393/148‑1 (MQ=255)
                                                            ttGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGaa                                                                                  <  1:1176714/148‑1 (MQ=255)
                                                                agaaaGGGTACAAATAACACATCAATAAAAGTATCAAATCGCGAAGAAAACCCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGAGTATTAAGGCCATTATTTGGATTATCTCTTGTCCTGTTATTTATAATTCAATTaa                                                                              <  2:1367199/146‑1 (MQ=255)
                                                                aTAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTaa                                                                              <  1:93942/148‑1 (MQ=255)
                                                                  aaaGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATATATAATTGAATTAgta                                                                            >  2:946200/1‑148 (MQ=255)
                                                                   aaGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATCATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAatat                                                                           <  2:232969/148‑1 (MQ=255)
                                                                    aGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAAtctt                                                                          >  2:1175799/1‑148 (MQ=255)
                                                                    aGCGTACAAAAAATACTGCAACAAAAGTACCACATCCCGTAAAAAAACCAGCATCTCCATCACTTATATTATGTCTTATTGTTTTAGTTTTATTCATGCCAATATTTGGATTATCACTAATCTATGTATTTATAATTGAATTCAtttt                                                                          >  2:1175767/1‑148 (MQ=255)
                                                                      cGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAAtattat                                                                        <  2:48015/148‑1 (MQ=255)
                                                                      cGTACAAAAAATACTGCAATAAAACTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTTTAATTGAATTATttttat                                                                        >  1:702101/1‑148 (MQ=255)
                                                                          cAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTatatat                                                                    >  1:1006385/1‑148 (MQ=255)
                                                                              aaaTACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTaaa                                                                <  2:1405946/148‑1 (MQ=255)
                                                                                 tACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTACCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGAt                                                             <  1:1171671/148‑1 (MQ=255)
                                                                                     gCAATAAAAGTACCACATCGCGTAGAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGAtcgtc                                                         >  1:839094/1‑148 (MQ=255)
                                                                                     gCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTGTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATTTATTAAATatcatc                                                         >  1:156113/1‑148 (MQ=255)
                                                                                        agaaaaGTACAAAATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTg                                                      <  2:464169/146‑1 (MQ=255)
                                                                                        aTAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCCTAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGCTTATCACTTCTCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTg                                                      <  2:400795/148‑1 (MQ=255)
                                                                                        aTAAAAAGAGCACAGCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTg                                                      <  2:401424/148‑1 (MQ=255)
                                                                                            aaGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTaa                                                  >  2:57132/1‑148 (MQ=255)
                                                                                            aaGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTaa                                                  <  2:58359/148‑1 (MQ=255)
                                                                                               tACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACa                                               <  1:1205502/148‑1 (MQ=255)
                                                                                               tACCAAATCGCGTAAAAAAACCAGCATTTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACa                                               <  2:72552/148‑1 (MQ=255)
                                                                                                cacataacgcgTATAAAACTCTTCATCTATATCACTCATTTTATGTTTTATTTTTTTAGAATTGTTAATGCCGTCACTTGTATTATCAGCTATCCTTGTTTTTATAATTTAATTAATATTATATATTAAAGATTGTTGTGCTAATCaa                                              <  2:569956/141‑1 (MQ=255)
                                                                                                aCCACATCGCGAAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACaa                                              <  2:490528/148‑1 (MQ=255)
                                                                                                      tCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGc                                        >  1:719065/1‑148 (MQ=255)
                                                                                                      tCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGc                                        >  1:903587/1‑148 (MQ=255)
                                                                                                      tCGCGTAAAAAAACCAGCATCTATATCACCCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAAGAATGc                                        <  2:1295696/148‑1 (MQ=255)
                                                                                                                         tCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGa                     <  2:1150359/148‑1 (MQ=255)
                                                                                                                               ttaCTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAACATAATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAAt               <  1:967336/146‑1 (MQ=255)
                                                                                                                               tCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAATGTTTTGGACTGACGAAAt               >  2:1102688/1‑148 (MQ=255)
                                                                                                                               tCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAAt               >  2:109614/1‑148 (MQ=255)
                                                                                                                               tCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAAt               >  2:71967/1‑148 (MQ=255)
                                                                                                                               tCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAAt               >  1:770979/1‑148 (MQ=255)
                                                                                                                                cACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAAtt              >  2:761794/1‑148 (MQ=255)
                                                                                                                                cACGCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAAtt              <  1:146507/148‑1 (MQ=255)
                                                                                                                                 aCTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAAttt             >  1:510415/1‑148 (MQ=255)
                                                                                                                                 aCTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCATTGTAGTTATCCTTTAAGTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACTAAAttt             >  1:1391547/1‑148 (MQ=255)
                                                                                                                                     ttaataTGTTTTATTGGAGTAGGATTAGTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAAGAATGCACTTAAAGTTTTGAACTGACGAAATTTACaa         <  1:278018/147‑1 (MQ=255)
                                                                                                                                        atatGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAATTTACAAAAt      >  1:1237486/1‑148 (MQ=255)
                                                                                                                                        atatGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCAATTAAAGTTTTGAACTGACGTAATTAACAAAAt      >  2:879501/1‑148 (MQ=255)
                                                                                                                                         tatGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAATTTACAAAATg     >  1:746714/1‑148 (MQ=255)
                                                                                                                                           tGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAATTTACAAAATGAt   >  1:202822/1‑148 (MQ=255)
                                                                                                                                            gTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGCACTGACGAAATTTACAAAATGAtt  >  1:947034/1‑148 (MQ=255)
                                                                                                                                            gTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAATTTACAAAATGAtt  >  2:1246326/1‑148 (MQ=255)
                                                                                                                                                |                                                                                                                                               
AATCATTAATTTATTTGTATGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTAATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAATTTACAAAATGATT  >  CP000730/1513786‑1514073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑