Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 1,105,994 T→C T12T (ACT→ACC pdhD → dihydrolipoyl dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,105,9940TC98.0% 314.9 / NA 98T12T (ACT→ACCpdhDdihydrolipoyl dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (50/46);  minor base A (2/0);  total (52/46)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CATTAAGCTTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGCATTACTACA  >  CP000730/1105849‑1106137
                                                                                                                                                 |                                                                                                                                               
cATTAAGCTTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACcat                                                                                                                                               <  1:257206/148‑1 (MQ=255)
     aGCTTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTaa                                                                                                                                          >  2:1373313/1‑148 (MQ=255)
      gcctttaCCACAAACAAATTGATGGTGCAACTGGCCAAAATGCAATGAAGCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAAt                                                                                                                                         <  2:965409/142‑1 (MQ=255)
      gCTTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAAt                                                                                                                                         <  1:935069/148‑1 (MQ=255)
      gCTTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAAt                                                                                                                                         <  1:981801/148‑1 (MQ=255)
       cTTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGGGGGGTAAAACATGGTAATGGGTGATTTCCCAATTGAAACAGATGCAATAGTAAtg                                                                                                                                        >  2:291682/1‑147 (MQ=255)
        tttGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGCGGATTTTCCAATTGAAACAGATACCTTAGTAATCg                                                                                                                                       >  1:258889/1‑148 (MQ=255)
        tttGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATAAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAACACATGGTAGTTGGAGATTTCCTAATTGAAACAGATACCATAGTAATCg                                                                                                                                       >  2:128022/1‑148 (MQ=255)
        tttGACCACAGACAAATTGATGGTGCAACTGGCCAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCgg                                                                                                                                      <  1:1013316/148‑1 (MQ=255)
        tttGACCACAGACAAATTGATGGTGCAACTGGACAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTGGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCg                                                                                                                                       >  1:476718/1‑148 (MQ=255)
         ttGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCgg                                                                                                                                      <  1:1076118/148‑1 (MQ=255)
            aCCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTCTTAAATAATACAGAATTATTATTAATGGAGGGGTAAGACATGGAAGTTGGCGATTTACCACTTGAAACAGATAACAGAGTAATCGGAGc                                                                                                                                   >  2:39717/1‑148 (MQ=255)
            aCCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGc                                                                                                                                   >  1:764779/1‑148 (MQ=255)
            aCCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGc                                                                                                                                   >  1:74505/1‑148 (MQ=255)
             ccACAGACAAATTGATGGTGGAGTGTGCGATAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGGGATTTCCCAATTGGAACAGATACCATAGTAATCGGAGCa                                                                                                                                  <  2:1345496/148‑1 (MQ=255)
              cacaGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGGGCAg                                                                                                                                 >  1:224595/1‑148 (MQ=255)
              cacaGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAg                                                                                                                                 >  1:412092/1‑148 (MQ=255)
              cacaGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTAAAAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAg                                                                                                                                 >  1:1326902/1‑148 (MQ=255)
                caGACAAATTGATGTTGCAACTGGCCAAAATGCAATGAATCACATTAACCGTCTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGt                                                                                                                               <  1:1241193/148‑1 (MQ=255)
                 cgACAAAGTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTc                                                                                                                              <  1:71822/147‑1 (MQ=255)
                 aGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTc                                                                                                                              <  2:366823/148‑1 (MQ=255)
                 aGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTc                                                                                                                              <  1:1190639/148‑1 (MQ=255)
                   aCAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCt                                                                                                                            >  2:1318980/1‑148 (MQ=255)
                     aaaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCtgg                                                                                                                          <  2:600401/148‑1 (MQ=255)
                     aaaTTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCtgg                                                                                                                          <  2:567080/148‑1 (MQ=255)
                        ttGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCtggtgg                                                                                                                       >  1:139297/1‑148 (MQ=255)
                        ttGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGGTTATTGAATAATCCAGAATTATGATTGATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCCGGTCCtggtgg                                                                                                                       >  1:1322661/1‑148 (MQ=255)
                          gATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGAt                                                                                                                     <  2:482544/148‑1 (MQ=255)
                           aTGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATa                                                                                                                    >  1:759309/1‑148 (MQ=255)
                           aTGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATa                                                                                                                    >  1:1091308/1‑148 (MQ=255)
                              gTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGt                                                                                                                 <  2:417298/148‑1 (MQ=255)
                              gTGCAAATGGCCAAAATGGAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGt                                                                                                                 <  2:416581/148‑1 (MQ=255)
                                tgaaCTGTCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTg                                                                                                               <  2:612015/146‑1 (MQ=255)
                                gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATAGGTTg                                                                                                               >  1:979194/1‑148 (MQ=255)
                                gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTg                                                                                                               >  2:260795/1‑148 (MQ=255)
                                gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTg                                                                                                               >  1:1021548/1‑148 (MQ=255)
                                gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTg                                                                                                               >  2:1075245/1‑148 (MQ=255)
                                gCAACCGGCCAAAAGGCAATGAATCACATTAAACGTTTAATAAATAATCCAGAATTATTATGAATGGAGGGGTAAACCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTGACCGGTTCAGGTCCTGGTGGATACGTTg                                                                                                               <  2:159653/148‑1 (MQ=255)
                                    cTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTgcagc                                                                                                           <  1:89325/148‑1 (MQ=255)
                                      ggCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCaa                                                                                                         >  1:1153997/1‑148 (MQ=255)
                                          aaaaTGCAATGAATCACTTTAAACGTTTATTAAATACTCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTGCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCg                                                                                                     <  2:866835/148‑1 (MQ=255)
                                            aaTTCAATGAATCACATTAAACGTTTATTAAATAAGCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTg                                                                                                   <  2:228846/148‑1 (MQ=255)
                                             aTGCAACGAATCACCTTAAACGTTTGTTCAATAATTCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGTGATTTCCCCATGGAAACAGATACCATAGTAATCGGAGCAGCTCCTGGTGGATACGTTGCAGCAATTCGTGc                                                                                                  <  2:671012/148‑1 (MQ=255)
                                              tGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCa                                                                                                 >  2:52067/1‑148 (MQ=255)
                                                 aaTGAATCACATTAAACGTTTATTAAATCATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCt                                                                                              <  2:1153665/148‑1 (MQ=255)
                                                 aaTGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCt                                                                                              <  1:1072144/148‑1 (MQ=255)
                                                    gAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCac                                                                                           >  2:249158/1‑147 (MQ=255)
                                                             tcaaCGTTTATTAAATAATACAGAATGAATCTTTACCGCGGGTTAAAACATAGCAGATGGAGATTTCCCAATTGAAACAGATACCGTAGAAATGGGAGCAGCGCCCGGTGGCTACATGCCAGCAGTTCGTCCATCTCAATTAGGCCaa                                                                                  >  2:263732/3‑148 (MQ=255)
                                                             tAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTTCTAGGGGATACGTTGCATCAATTCGTGCAGCTCAATTAGGACaa                                                                                  >  1:1160060/1‑148 (MQ=255)
                                                                gcGTGTATTGAATAGTCCAGAATTAGTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACaaaaa                                                                               <  2:1255487/147‑1 (MQ=255)
                                                                acggtgattaAATAGTCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACaaaaa                                                                               <  2:1409186/142‑1 (MQ=255)
                                                                        taAATAATCCAGAATTATGATTAATGGAGGGGTAAAACATGGTCATTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGTAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTAAATAAGAACAAAAAGTAACAAt                                                                       <  2:724149/148‑1 (MQ=255)
                                                                          aataatCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCTGCTCAATTAGGACAAAAAGTAACAATCg                                                                     <  1:854275/148‑1 (MQ=255)
                                                                          aataatCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCACTTAGGACAAAAAGTAACAATCg                                                                     >  2:1012825/1‑148 (MQ=255)
                                                                             tatCCAGCATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGGAACAATCGTTg                                                                  <  2:166587/147‑1 (MQ=255)
                                                                               tCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTgag                                                                >  1:1235211/1‑148 (MQ=255)
                                                                                 cAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGCCAAAAAGTAACAATCGTTGCGaa                                                              >  2:255651/1‑148 (MQ=255)
                                                                                 cAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGaa                                                              >  1:1292758/1‑148 (MQ=255)
                                                                                  aGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGaaa                                                             >  1:169021/1‑148 (MQ=255)
                                                                                  aGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAAACGTTGAGaaa                                                             >  1:451212/1‑148 (MQ=255)
                                                                                  aGAATGAGTATAAATGGAGGGGGAAAACATTGTAGTTGGAGATTTCCCAATTGAAACAGATACCAGAGTAATCGGAGCAGGTCCTGGTGGATATGTTGCAGCAATTCGTGAAGCTCAATTAAGACAAAAAGTAACAATCGTTGAGaaa                                                             <  2:274742/148‑1 (MQ=255)
                                                                                   aaaatagtattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAg                                                            <  1:860569/141‑1 (MQ=255)
                                                                                        attattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCGCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAAt                                                       >  1:111632/1‑148 (MQ=255)
                                                                                        attagtaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAAt                                                       <  1:92138/148‑1 (MQ=255)
                                                                                           attaATGGAGGGGTCAAACATGGTAGTTGGAGATTTACCAATTGAAACAGATACCATAGTAATCGAAGCAGGTCCTTGTGGATACGTTTCAGCAGTTCGTGCAGCTCCATTAGGACGAAAAGTATCAATCGTTGAGAAAGGTaactta                                                    >  2:376962/1‑144 (MQ=255)
                                                                                              aaTGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAATAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGGCAAAAAGTAACAATCGTTGAGAAAGGTACGCTtggt                                                 >  2:198549/1‑148 (MQ=255)
                                                                                                tGGAGGGGTAAAACATGGTAGTTGGTTGTTGCCGAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTtggtgg                                               <  1:28766/148‑1 (MQ=255)
                                                                                                tGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTtggtgg                                               >  2:837152/1‑148 (MQ=255)
                                                                                                tGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTtggtgg                                               >  1:1143660/1‑148 (MQ=255)
                                                                                                tGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTgggtgg                                               >  2:289177/1‑148 (MQ=255)
                                                                                                 ggAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTggtggt                                              >  1:1270824/1‑148 (MQ=255)
                                                                                                 ggAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTggtggt                                              >  1:1289939/1‑148 (MQ=255)
                                                                                                 ggACGGGTATAACATTGAAGTTGGAGATTTCCCAATTGAAACAGATACCACAGTAATCGGAGCACGACCAGGGGAATTCGTTGCAGCCATTCGGGCAGCTCAATTGGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTggtggt                                              <  2:153373/148‑1 (MQ=255)
                                                                                                   aGGGGTAAAACCTGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCATGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGgtgt                                            <  1:966121/148‑1 (MQ=255)
                                                                                                   aGGGGTAAAACATGGTAGTTGGAGATTTCGCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAACAAGTAACAATCGTTGAGTACTGTAATCTGTGtgttgt                                            >  2:968324/1‑148 (MQ=255)
                                                                                                   aGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGgtgt                                            >  2:16994/1‑148 (MQ=255)
                                                                                                    ggggTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTGGGTGGTGtt                                           >  2:1390787/1‑148 (MQ=255)
                                                                                                      ggTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTg                                         >  1:465107/1‑148 (MQ=255)
                                                                                                      ggTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTg                                         >  1:342462/1‑148 (MQ=255)
                                                                                                       gTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGc                                        <  2:465107/148‑1 (MQ=255)
                                                                                                       atAAAACATGGTAGTTGGAGATTGCCCAATTAAAACAGATACCAAAATAATCGGAGCAAGTCCTAATGAATACAAAGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAAACGTTGAGAAAGGTAATCTTGGTGGTGTTTGc                                        <  2:1312130/147‑1 (MQ=255)
                                                                                                         aataCAGGGTAGTTGGAAATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTGACATTCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCtt                                      <  2:363579/145‑1 (MQ=255)
                                                                                                           aaCATGGTAGTTGGATATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGCTGAGAAAGGTAATCTTGGTGGTGTTTGCTTaa                                    <  2:1377770/148‑1 (MQ=255)
                                                                                                           aaCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTtggtggcgcctgcctaa                                    >  2:611581/1‑137 (MQ=255)
                                                                                                           aaCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTAGTGTTTGCTTaa                                    >  1:549319/1‑148 (MQ=255)
                                                                                                             cATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAAc                                  >  2:533462/1‑148 (MQ=255)
                                                                                                                 gTAGTTGGAGATTTACTAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGGAGCTGAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAg                              <  2:771986/148‑1 (MQ=255)
                                                                                                                     ttGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATg                          >  1:1253878/1‑148 (MQ=255)
                                                                                                                       ggAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTa                        <  1:1373313/148‑1 (MQ=255)
                                                                                                                           aTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTcc                    >  1:1102062/1‑148 (MQ=255)
                                                                                                                                   aattaaaCAGAAACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAg            <  2:211311/144‑1 (MQ=255)
                                                                                                                                   aTTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAg            <  1:449783/148‑1 (MQ=255)
                                                                                                                                   aTTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAg            <  1:708261/148‑1 (MQ=255)
                                                                                                                                   aTTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGAGACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACATTCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAg            <  1:128022/148‑1 (MQ=255)
                                                                                                                                    ttGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGc           <  1:481071/148‑1 (MQ=255)
                                                                                                                                     tGAAACAGATATCATAGTAATCGGAGCAGGTCCGGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGCa          <  2:475713/148‑1 (MQ=255)
                                                                                                                                        aaCAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTTCTTCAAAAGCATta       >  1:89836/1‑148 (MQ=255)
                                                                                                                                          cAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGCATtact     >  2:517470/1‑148 (MQ=255)
                                                                                                                                             aTACAATAGTAATCGAAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGCATTACTACa  >  2:1125805/1‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                               
CATTAAGCTTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCAAAAGCATTACTACA  >  CP000730/1105849‑1106137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: