New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 34173 =74 (1.250)4 (0.070) 3/254 NT 5.0% coding (462/480 nt) orfX hypothetical protein OrfX
?CP000730 = 88831 79 (1.370)coding (126/138 nt) USA300HOU_0086 hypothetical protein

AACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTGCGCATATAACTTAAGTAGT  >  CP000730/88693‑88970
                                                                                                                                          |                                                                                                                                           
aaCTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCag                                                                                                                                           >  1:287073‑M2/1‑139 (MQ=255)
aaCTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCag                                                                                                                                           >  2:499714‑M2/1‑139 (MQ=255)
      ttattGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCTCATCATTAACCGATACTCAGAGTCGt                                                                                                                                     >  2:609550/1‑141 (MQ=255)
      ttattGATAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAAAAACATTTATCAAAAAACTGTTCATTACCTTATCAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGcta                                                                                                                                     >  2:437891/1‑139 (MQ=255)
       tattGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTa                                                                                                                                    <  1:575031/141‑1 (MQ=255)
         ttGTTAAGGATGTTATTTTTTAGTGTTTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTTACCGATACGCagaagcatatc                                                                                                                                  >  2:476795‑M2/1‑130 (MQ=255)
         ttGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCagaagcatatc                                                                                                                                  >  1:6128‑M2/1‑130 (MQ=255)
           gTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCAt                                                                                                                                >  2:165853/1‑141 (MQ=255)
           gTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCAt                                                                                                                                >  2:26889/1‑141 (MQ=255)
           gTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTACAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGTGGCGAATCAt                                                                                                                                >  2:371106/1‑141 (MQ=255)
                 gaggaTATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTaa                                                                                                                          <  1:365935/141‑1 (MQ=255)
                 atagaTATTTTATAGTGTTTAAATTAAAAAGAATTTAATAATAATAAAATTTAAAAAAAAACTGTTCATTACCTTATAAATTGAAATTATATAATTAAAAACAGAATCATTAACCGATACGCCGTGGCGTATCATaaaaaa                                                                                                                          <  2:354132/138‑5 (MQ=255)
                  aggaTATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTaaa                                                                                                                         <  1:55837/141‑1 (MQ=255)
                     atatTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTACAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACt                                                                                                                      >  1:646535/1‑141 (MQ=255)
                       atTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAACAAAATTTAACAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTaa                                                                                                                    <  2:259116/141‑1 (MQ=255)
                        ttttttAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGTTAAGTAGATGCGTATCATAAGTAAAACTaaa                                                                                                                   <  1:686269/141‑1 (MQ=255)
                         tttttAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTaaaa                                                                                                                  >  1:10615/1‑141 (MQ=255)
                         tttttAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTaaaa                                                                                                                  >  1:10628/1‑141 (MQ=255)
                         tttgtattctgtAAAAAAAAAAAAATATTAGAAGAATAACAATTAACAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTaaaa                                                                                                                  <  1:108020/132‑1 (MQ=255)
                          ttttAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTATTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTaaaaa                                                                                                                 >  2:423029/1‑141 (MQ=255)
                             tAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAAtt                                                                                                              <  2:459298/141‑1 (MQ=255)
                             aagagtgtAAATTAAAAAGAATTTTAGAAGAATAACATTTAACAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGCAAAACTAAAAAAtt                                                                                                              <  2:474582/137‑1 (MQ=255)
                              aGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTACAAAATTc                                                                                                             <  2:440694/141‑1 (MQ=255)
                               gtgtgtAAATTAAAAAGAATTTTATAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCt                                                                                                            <  2:341640/141‑1 (MQ=255)
                               gggttaaacttAAAAACAATGTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTAGTAATTGAAATTATATAATTAAAAACCGCAGCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCt                                                                                                            <  2:107579/132‑1 (MQ=255)
                                 tttttttttAAAAAGAATTTTAGAAGAATAACATTTATCAGAAAACTCTTCATTACCTTATTAATTGAAATTATATTTTTAAAAATTGCATCATTAACCGATACGCAGAGGCGTATGATAAGTAAAACTAAAAAATTATGt                                                                                                          >  2:435008/8‑141 (MQ=255)
                                 gtgtAAATTAAAAATAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACGGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGt                                                                                                          <  1:462379/141‑1 (MQ=255)
                                 gtgtAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGt                                                                                                          <  1:462302/141‑1 (MQ=255)
                                 gtgtAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGt                                                                                                          >  2:187671/1‑141 (MQ=255)
                                  tgtAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTa                                                                                                         <  2:217597/141‑1 (MQ=255)
                                  tgtAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTa                                                                                                         >  2:682168/1‑141 (MQ=255)
                                     aaaTTAAAAAGAATTTTAGAATAATCACATCTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATGAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATga                                                                                                      <  1:204842/141‑1 (MQ=255)
                                     aaaTTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACTGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAGACTAAAAAATTCTGTATga                                                                                                      <  1:417468/141‑1 (MQ=255)
                                     aaaTTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATga                                                                                                      <  1:602408/141‑1 (MQ=255)
                                           aaaaGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGat                                                                                                <  1:121268/141‑1 (MQ=255)
                                             aaGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGataa                                                                                              <  1:654705/141‑1 (MQ=255)
                                              aGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCagaagcatatcataaatgatgcggttttttcagccgcttcataaaggg                                                                                             >  2:413873‑M2/1‑93 (MQ=255)
                                               gAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAATTCATGTTCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGataata                                                                                            <  1:163246/141‑1 (MQ=255)
                                               aaaTTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGataata                                                                                            <  1:35700/140‑1 (MQ=255)
                                               aaaTTTTAGAAGAATAACAATTATAAAAAAACTGTTCATTACCTTATTAATTGAAAGTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAAAAAAAAAAAAAAATTCTGCATGAGGAGataata                                                                                            <  2:643518/140‑1 (MQ=255)
                                                aaTTTTCGAAGAATAACATTTATCAAAAAACTCTTCAATACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGAtaataa                                                                                           <  2:553546/141‑1 (MQ=255)
                                                aaTTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGAtaataa                                                                                           <  2:451984/141‑1 (MQ=255)
                                                aaTTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTAACTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTAGCATAAGTAAAACTAAAAAATTCTGTATGAGGAGAtaataa                                                                                           <  2:683955/141‑1 (MQ=255)
                                                 aTTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACTCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATaataat                                                                                          <  2:664271/141‑1 (MQ=255)
                                                 aTTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATaataat                                                                                          <  2:400339/141‑1 (MQ=255)
                                                    ttAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTg                                                                                       <  2:429983/141‑1 (MQ=255)
                                                        aagaaTAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAgg                                                                                   >  2:585653/1‑141 (MQ=255)
                                                          aaaTAACATTTATCAAAAAACCTTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGgt                                                                                 <  2:646833/140‑1 (MQ=255)
                                                                cATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTaaa                                                                           <  2:409849/141‑1 (MQ=255)
                                                                 aTTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAAt                                                                          >  1:324352/1‑141 (MQ=255)
                                                                 aTTAATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAAt                                                                          <  2:363241/141‑1 (MQ=255)
                                                                  tttATCAAAAAACCTTTCATTACCTTATTAATTTAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAAtg                                                                         <  2:103476/141‑1 (MQ=255)
                                                                       cAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGa                                                                    <  2:520448/141‑1 (MQ=255)
                                                                        aaaaaaCTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGAc                                                                   <  1:266252/141‑1 (MQ=255)
                                                                         aaaaaCTGTTCATTACCTTATTAATTGACATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACa                                                                  <  1:393066/141‑1 (MQ=255)
                                                                          aaaaCTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggt                                                                 <  2:356490‑M2/141‑77 (MQ=255)
                                                                          aaaaCTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACAt                                                                 >  1:528815/1‑141 (MQ=255)
                                                                             acggatCATTACATGATGAAATGAAATTATAGAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTaa                                                              <  2:605102/136‑1 (MQ=255)
                                                                              cTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTaaa                                                             <  2:623763/141‑1 (MQ=255)
                                                                              cTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTaaa                                                             <  2:687569/141‑1 (MQ=255)
                                                                               tGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAAt                                                            >  1:176704/1‑141 (MQ=255)
                                                                               tGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAAt                                                            >  1:623240/1‑141 (MQ=255)
                                                                                  tCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTTAATGGTGGACATTAAATCCa                                                         <  1:423241/141‑1 (MQ=255)
                                                                                  tCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCa                                                         <  2:640496/141‑1 (MQ=255)
                                                                                  tCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCa                                                         <  2:64338/141‑1 (MQ=255)
                                                                                  tCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGATAATTGGTGGACATTAAATCCa                                                         <  2:493928/141‑1 (MQ=255)
                                                                                  tCATGACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCa                                                         <  1:79841/141‑1 (MQ=255)
                                                                                           tattaATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGttcattc                                                <  1:682168/141‑1 (MQ=255)
                                                                                            attaATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGttcattca                                               >  1:688240/1‑141 (MQ=255)
                                                                                                  tGAAATTATATAATTAAAAACCGTAAAGTTAACCTATACGCAGCGGATTGAAAAGAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAatatat                                         <  1:677412/141‑1 (MQ=255)
                                                                                                  tGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAatatat                                         <  2:229010/141‑1 (MQ=255)
                                                                                                  tGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAatatat                                         <  1:533977/141‑1 (MQ=255)
                                                                                                  tGAAAATATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAatatat                                         <  2:19882/141‑1 (MQ=255)
                                                                                                                gaaaaaCCGCATCATTAACCGAAACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGa                           <  2:398024/140‑1 (MQ=255)
                                                                                                                   aaaCCGCATCATGAACCGATCCGCAGAGGCGTACCATAAGTAAAACTAAGAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATaa                        <  2:421769/141‑1 (MQ=255)
                                                                                                                      ccgactcatTACCCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACACTAAATCCACGTTCATTCAATATATTAGATATATCACGATAATTg                     <  2:521422/136‑1 (MQ=255)
                                                                                                                      ccGAATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTg                     <  2:561866/141‑1 (MQ=255)
                                                                                                                       cGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCCTTCTATATATAAGATATATCACGATAATTgc                    <  1:165853/141‑1 (MQ=255)
                                                                                                                       cGCATCATTAACCGATACGCAGAGGCCTATCATAAGTAAAACTACAAAATTCTGTATGAGGAGATAATAATTTGGAGAGTGTTAAATTGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTgc                    <  1:26889/141‑1 (MQ=255)
                                                                                                                       cGCATAATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTgc                    <  1:371106/141‑1 (MQ=255)
                                                                                                                        gCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATATGATATATCACGATAATTgcg                   <  1:423029/141‑1 (MQ=255)
                                                                                                                        ccatcacTAACCGATACGCAGAGGCGTATCATAAATAAAACTAAAAAATACTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATTAGATATATCACGATAATTgcg                   <  1:656253/140‑1 (MQ=255)
                                                                                                                            catTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTGCGCata               <  2:646535/141‑1 (MQ=255)
                                                                                                                            catTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTGCGCata               <  1:202068/141‑1 (MQ=255)
                                                                                                                               tAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTGCGCATATaa            <  2:338250/141‑1 (MQ=255)
                                                                                                                                 aCCGATACGCAGAGGCGTCTCCTTCCAGGAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTGCGCATATAACt          >  1:338250/1‑141 (MQ=255)
                                                                                                                                   cGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTGCGCATATAACTTa        >  1:145446/1‑141 (MQ=255)
                                                                                                                                      tACGCAAAGGCGTATCATAAGTAAAACGAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTGCGCATATAACTTAagt     <  2:87370/141‑1 (MQ=255)
                                                                                                                                         gCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATTGTGGACATTAAATCCACGTTCATTCAATATATAAGATATACCACGCTAATTGCGCTTCTACATTAagtagt  >  1:66160/1‑141 (MQ=255)
                                                                                                                                          |                                                                                                                                           
AACTTATTATTGTTAAGGAGGATATTTTTTAGTGTGTAAATTAAAAAGAATTTTAGAAGAATAACATTTATCAAAAAACTGTTCATTACCTTATTAATTGAAATTATATAATTAAAAACCGCATCATTAACCGATACGCAGAGGCGTATCATAAGTAAAACTAAAAAATTCTGTATGAGGAGATAATAATTTGGAGGGTGTTAAATGGTGGACATTAAATCCACGTTCATTCAATATATAAGATATATCACGATAATTGCGCATATAACTTAAGTAGT  >  CP000730/88693‑88970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.