New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =46 (0.780)36 (0.880)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA
24/180 NT 53.1% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA

ACTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTAT  >  CP000730/1998138‑1998416
                                                                                                                                             |                                                                                                                                          
aCTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTa                                                                                                                                            <  1:387869/141‑1 (MQ=35)
aCTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGAGGCTCTCCCAGCTGAGCTAATTCTCCGATTTa                                                                                                                                            <  1:575499/141‑1 (MQ=25)
 cTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTACGATTTaa                                                                                                                                           >  1:466722/1‑141 (MQ=37)
       aCAAGTCAGTCGTTCTACCAGTTGAGCTAGGCCGGCAATATGGAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGc                                                                                                                                     <  2:625137/141‑1 (MQ=255)
         aaGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCt                                                                                                                                   <  2:618607/141‑1 (MQ=255)
         aaGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCt                                                                                                                                   <  2:152287/141‑1 (MQ=255)
           gTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTgg                                                                                                                                 >  1:79359/1‑141 (MQ=255)
           gTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACAGAAAAACGTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTgg                                                                                                                                 >  1:332511/1‑141 (MQ=14)
            tCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGc                                                                                                                                >  1:87402/1‑141 (MQ=255)
            tCAGTTGCTCTACCAATTGAGATAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTggg                                                                                                                                >  1:94911/1‑140 (MQ=255)
               gttgcccgcccAATTTAGCGAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGACCCGCCGACCCCCTGCGTGTTAGGCTGATGCCCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                             <  1:131564/132‑1 (MQ=17)
               gTTGCTCTACCAATTGAGCTAGGCCTGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                             <  2:126604/141‑1 (MQ=255)
               gTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                             <  1:491597/141‑1 (MQ=255)
               gTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                             <  1:601617/141‑1 (MQ=255)
                ttGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCGGGCAACg                                                                                                                            >  2:541976/1‑141 (MQ=255)
                   ctctACCAATTGGGCTAGGCCGGGAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTc                                                                                                                         <  2:387469/141‑1 (MQ=255)
                           aTTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATCCTCCGATTTACAACTGCCTGGCAACGTCCTGCTCTAg                                                                                                                 >  2:693037/1‑141 (MQ=255)
                            ttGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGc                                                                                                                >  1:538672/1‑141 (MQ=255)
                             tGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCg                                                                                                               >  1:21542/1‑141 (MQ=255)
                                gCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGAGTTAAAACTGCCTGGCAACGTTCTACTCTGGCGGac                                                                                                            >  1:54459/1‑140 (MQ=255)
                                 cTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAAc                                                                                                           >  2:672936/1‑141 (MQ=255)
                                  tAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGCCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                          <  1:324490/141‑1 (MQ=255)
                                  tAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                          <  1:383582/141‑1 (MQ=255)
                                  tAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                          <  1:252936/141‑1 (MQ=255)
                                  caGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                          <  1:35128/140‑1 (MQ=255)
                                   aGGCCGGCAATATGCAAGAATAAATCGTGGAGAATGACGGGTTCTAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt                                                                                                         >  1:382334/1‑141 (MQ=255)
                                    ggCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTa                                                                                                        >  2:643173/1‑141 (MQ=255)
                                      ccGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAATGTTCTACTCTAGCGGAACGTAAg                                                                                                      >  1:658691/1‑141 (MQ=255)
                                       cGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGt                                                                                                     <  1:4615/141‑1 (MQ=255)
                                       cGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGt                                                                                                     >  2:531265/1‑141 (MQ=255)
                                       cGGCAATATGTAAGAATAAATGGTGGAGAAAGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTACAACTGCCTGGCAACGTCCTACTCTAGCGGAACGTAAGt                                                                                                     >  2:117210/1‑141 (MQ=255)
                                        ggCAATATGTAAGAATAAATGGTGGAGAATCACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGtt                                                                                                    >  1:617020/1‑141 (MQ=255)
                                               tGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                             <  2:184011/141‑1 (MQ=255)
                                               tGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                             <  1:68651/141‑1 (MQ=255)
                                               tGTAAGAATAAAAGGGGGAGAATGACGGGTTCGACCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                             <  2:463592/141‑1 (MQ=255)
                                                gTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                            <  1:643173/141‑1 (MQ=255)
                                                 tAAGAATAAAAGGTGAAGAATGACGGGTTCGAACAGCAGCACCTCTGCTTGTAAGGCAGATGCTATCCCAGCTGAGCTAATTCTCCGATTTAAAACTACATGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGCCTACCa                                                                                           >  2:185374/1‑141 (MQ=14)
                                                      aTAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACACTCGAc                                                                                      >  2:95016/1‑141 (MQ=255)
                                                       tAAATGGTGGCGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCCGATGCTATCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTCCGACTACCATCGACg                                                                                     <  2:524313/141‑1 (MQ=255)
                                                       tAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGGGGAACGGAAGTTCGACTACCATCGACg                                                                                     >  1:13889/1‑141 (MQ=255)
                                                        aaaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAGCGTTCTACTCTAGCGGAACGGAAGTTCGACCACCATCGAccc                                                                                    >  2:552278/1‑139 (MQ=255)
                                                        aaaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGc                                                                                    >  2:655202/1‑141 (MQ=255)
                                                         aaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTCCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCt                                                                                   >  1:603578/1‑141 (MQ=255)
                                                         aaTGGTGGAGAATGACGGGTTCGAACCGCAGACCCTCTGATCGTCCGGCAGAGCCTTCCCCGCGCGCGCTGCTGCTGGGGTTGAAAACGGCCCGGCTACGTTCTGCTCTATCGGAACGGAAGTTCGACTACCATCGACGCt                                                                                   >  2:683852/1‑141 (MQ=9)
                                                            ggtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAg                                                                                <  1:104090/141‑1 (MQ=255)
                                                             gtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAgg                                                                               >  1:251405/1‑141 (MQ=255)
                                                              tggAGAATGGAGGGTTCGAACCGCGGACCCTCTCACCGGAAGGCTGATGATCCAGCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTGAGTTCGACTACCATCGACGCTAAgta                                                                              >  1:508365/1‑139 (MQ=17)
                                                              tggAGAATGACGGGTTCGGCCCGCCGACCCTCTGCTTGTAAGGCAGATGCCCTCCCAGCTTAGCTACTTCTCCGATTTGAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGa                                                                              <  2:76025/141‑1 (MQ=14)
                                                               ggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAg                                                                             <  2:277850/141‑1 (MQ=255)
                                                                     tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGACTGGCAACGTTCTACTCTAGCGGAACGTAAGTGCGCCAACGCTCGCCGGTAAGGAGCTTTAc                                                                       >  2:584248/1‑141 (MQ=14)
                                                                     tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAAATGCTCTCCCAGCTGAGCTAATTCTCCGATTGAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAc                                                                       >  2:248765/1‑141 (MQ=255)
                                                                      gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACt                                                                      <  1:573010/141‑1 (MQ=255)
                                                                      gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCCGGCGAAACTGAAGTTCGACTACCATCGACGCTAAGGGGCTTAACt                                                                      >  1:535140/1‑141 (MQ=14)
                                                                       aagggTTCGAACCGCCGACCCCCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                     <  2:109106/139‑1 (MQ=255)
                                                                         gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCt                                                                   >  1:115100/1‑141 (MQ=255)
                                                                                     ccgTCCCTCTGCTTGTAAGGCAGATGTTCTCCCTGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTCCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTGCTGTGTTCGGCATg                                                       <  2:685718/141‑1 (MQ=14)
                                                                                     ccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                       <  1:655202/141‑1 (MQ=255)
                                                                                                cTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgtgt                                            <  1:185374/141‑1 (MQ=255)
                                                                                                 ttGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGtgtg                                           <  2:55351/141‑1 (MQ=255)
                                                                                                   gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                         <  1:2356/141‑1 (MQ=255)
                                                                                                   gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                         <  2:631077/141‑1 (MQ=255)
                                                                                                    tAAGTCAGATGCTTTCCCAGCTGAGCTAATTTTACGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGGAAGTGCAACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcc                                        <  1:193930/141‑1 (MQ=14)
                                                                                                    tAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCCTGGGAACAGGTGTGAcc                                        >  1:277939/1‑141 (MQ=255)
                                                                                                     aaGGGACATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTCAGTTCGACTACCAGAGACGCTAAGGAGCTTAACCTCTGTGTTCGGCATGGGAACAGGTGTGAcct                                       <  1:133882/141‑1 (MQ=14)
                                                                                                     aaGGCAGATGCTGTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGtgtgtttt                                       <  2:255236/141‑5 (MQ=255)
                                                                                                         cAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                   >  2:277408/1‑141 (MQ=255)
                                                                                                          acgcgccatcCCAGCCGAGCTAATTCCCCTATTTAAACCCGCCTGGCTACGTTCTACTCTAGCGGAACGTAAGTTCCACTACCATCGACGCTAAGGAGCTTACCTGCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTg                                  <  1:232727/133‑1 (MQ=14)
                                                                                                           gATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGc                                 <  1:277408/141‑1 (MQ=255)
                                                                                                               ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtatt                             >  1:241554/1‑140 (MQ=255)
                                                                                                               ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCAAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCGGTGTGCGGCATGGGAACAGTGGTGACCTCCTTGCtata                             >  1:305204/1‑141 (MQ=17)
                                                                                                                tctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                            <  1:652069/141‑1 (MQ=255)
                                                                                                                tctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGAGTTCGGCATGGGGACAGGTGGGACCTCCTTGCTGTAg                            >  2:234446/1‑141 (MQ=255)
                                                                                                                  tcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCAGCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTc                          <  2:251405/141‑1 (MQ=255)
                                                                                                                        cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                    <  1:339977/141‑1 (MQ=255)
                                                                                                                         gggAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCGCgaga                    <  2:81904/139‑1 (MQ=255)
                                                                                                                                aaTTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGa             >  2:429209/1‑141 (MQ=255)
                                                                                                                                    ctcCGATTTATAAGTGCCTGTCAACGTTCTCCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGTGCTTAACTCCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGt         <  2:94911/141‑1 (MQ=11)
                                                                                                                                    cgccGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGt         <  2:87402/139‑1 (MQ=37)
                                                                                                                                           ttAAAACTGCCTGGCAACGTTCTACGCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGTAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtat  <  1:197525/141‑1 (MQ=25)
                                                                                                                                             |                                                                                                                                          
ACTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTAT  >  CP000730/1998138‑1998416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.