Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 584,121 G→T 100% intergenic (+205/‑67) rplA → / → rplJ ribosomal protein L1/ribosomal protein L10

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730584,1210GT100.0% 254.2 / ‑6.5 88intergenic (+205/‑67)rplA/rplJribosomal protein L1/ribosomal protein L10
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base T (52/34);  total (53/35)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACTATCAAATTCAGTT  >  CP000730/583984‑584256
                                                                                                                                         |                                                                                                                                       
gTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTgg                                                                                                                                      >  2:168019/1‑141 (MQ=255)
  aaTTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGt                                                                                                                                    <  2:107644/141‑1 (MQ=255)
       ccAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTATGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCCCTCAATGACTTTCTGCCTTGGGTAGaaa                                                                                                                               <  1:687145/141‑1 (MQ=255)
            ttATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCt                                                                                                                          <  2:125020/141‑1 (MQ=255)
            ttATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCt                                                                                                                          <  2:534853/141‑1 (MQ=255)
                attaattaTTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATTCAGGCGATGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCttttt                                                                                                                      <  1:332597/141‑1 (MQ=255)
                         tgttATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTGAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTttaaaatta                                                                                                             <  1:191934/141‑7 (MQ=255)
                            gATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTa                                                                                                          <  2:504780/141‑1 (MQ=255)
                            gATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTa                                                                                                          >  2:654283/1‑141 (MQ=255)
                            gATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGATAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTa                                                                                                          >  2:248803/1‑141 (MQ=255)
                            aattattTTACCTTAGGCAATAGGAGGTTTTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGGCTAGAATGTGATGGTCTATGATCTTTAAAGCACTTTTTGCCTGGGGTAGAAAGTGCTCTTTTTCTTTAGTTTa                                                                                                          >  2:82761/2‑141 (MQ=255)
                                attTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTaaaaa                                                                                                      >  1:628003/1‑141 (MQ=255)
                                   ttACCTAAGAAAGTGGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTGTTGCCTTGGGTAGAAAGAGCTTTTTTTATTAATTTTAAAAAAAg                                                                                                   >  2:471584/1‑141 (MQ=255)
                                    tACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGc                                                                                                  >  2:64248/1‑141 (MQ=255)
                                      ccTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCATTTTTTGCCGTGGGTAGAAAGTGCTTTTTTAATTATTTTTCAAAACAGCAc                                                                                                >  1:594915/1‑141 (MQ=255)
                                      ccTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCAc                                                                                                >  1:326380/1‑141 (MQ=255)
                                          aGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTCGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCaaa                                                                                            >  2:329937/1‑141 (MQ=255)
                                          aGACAGTAGGAGTTAGTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTGGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCATAGGGTAGAAAGTGCTTTTTTTGTTACTTTGCATACAAGCACCaaa                                                                                            >  2:329942/1‑141 (MQ=255)
                                              aGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAAtt                                                                                        <  2:308048/141‑1 (MQ=255)
                                               gTAGAAGTTATTTATAACTTAAAATTTATCCTACCGAGGCTAAAATTGACTTGAACGTGATGATATATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAACTTTAAAACACTCACCcaaacatt                                                                                       >  2:83399/1‑137 (MQ=255)
                                                    aGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATg                                                                                  >  2:269565/1‑141 (MQ=255)
                                                    aGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATg                                                                                  >  1:568452/1‑141 (MQ=255)
                                                         tttatAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGgt                                                                             >  1:10330/1‑141 (MQ=255)
                                                           tataACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCGAAACTTTAAACGGAGttgt                                                                           >  2:573868/1‑141 (MQ=255)
                                                           tataACTTAAAATTTATCCTGCCGAGGCTAAAATGGACGTGAACATGATGATCGATGATCTTTCAAGCACTTTTTGCCTTGAGAAGAAGGTGATGTTGTCATTAATGTTTAAAAAAGCAGCAAAAATCTAAATGAAGgtgt                                                                           >  2:330671/1‑141 (MQ=255)
                                                            ataACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTTAAAAAAGCACCAAAAATTTAAATGGAGGTGTc                                                                          <  1:484395/141‑1 (MQ=255)
                                                              aaCTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTg                                                                        <  2:181431/141‑1 (MQ=255)
                                                              aaCTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTg                                                                        <  2:605184/141‑1 (MQ=255)
                                                               aCTTAAAATTTATCCTGCCGAGGCTACAATTGACTTGAACGTGAGGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTCGAAAGTGCTTTTTTTATTCATTTTAAAAAAAGCACCAAACATTTAAATGGAGGTGTCtta                                                                       >  2:35308/1‑139 (MQ=255)
                                                                  tAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATAGAGGTGTCtacatt                                                                    >  2:423879/1‑136 (MQ=255)
                                                                     aaTTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGCATGTCt                                                                 >  2:14634/1‑141 (MQ=255)
                                                                     aaTTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCt                                                                 >  1:385819/1‑141 (MQ=255)
                                                                     aaTTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTCTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCt                                                                 >  1:162914/1‑141 (MQ=255)
                                                                      aTTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTg                                                                >  2:54601/1‑141 (MQ=255)
                                                                       tttATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGTTCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGc                                                               >  1:60062/1‑141 (MQ=255)
                                                                       tttATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGc                                                               <  2:593923/141‑1 (MQ=255)
                                                                       tttATCCTGCCGAAGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGc                                                               <  2:593982/141‑1 (MQ=255)
                                                                         tATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGTTTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAATAAAAGCACCTATAATTTAGATGGGGGtgtctgcttgtctgctt                                                             >  2:211817/1‑140 (MQ=255)
                                                                          aTCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATCAATTTTAAAAAAAGCACCATAAATTTAAATGGAGGTGTCTTAATGTCTGCTAt                                                            >  2:382678/1‑141 (MQ=255)
                                                                           tCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATc                                                           <  1:528766/141‑1 (MQ=255)
                                                                             cTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTATGCTATCAt                                                         >  1:49308/1‑141 (MQ=255)
                                                                              tGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTTCCTTGGGTAGAAAGTGAGTATTTTATTAATTTTAAAAAAAGAAGCAAAAATTTAAAAGGAGGGGTATTAATGTCTGAGATCAtt                                                        >  2:406095/1‑141 (MQ=255)
                                                                                 cGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTTAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGaa                                                     <  2:208781/141‑1 (MQ=255)
                                                                                  gAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAg                                                    <  2:121681/141‑1 (MQ=255)
                                                                                   aGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGc                                                   >  1:596027/1‑141 (MQ=255)
                                                                                    ggCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                                                  >  1:553981/1‑141 (MQ=255)
                                                                                    ggCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                                                  >  1:29720/1‑141 (MQ=255)
                                                                                    ggCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                                                  >  1:554082/1‑141 (MQ=255)
                                                                                    ggCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                                                  <  2:434854/141‑1 (MQ=255)
                                                                                     gCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTa                                                 <  1:64248/141‑1 (MQ=255)
                                                                                       tAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGTCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTATAAAAATCACACAAAATCTAAATGGAGGGGTCTTAATGTTTGCGATCAGTTAAGCTaaa                                               >  1:16864/1‑141 (MQ=255)
                                                                                         aaaTTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGTATAATATAAGTAAATGGAGGTGCCTGAATGTCTGCTATCATTGAAGCTgaaaa                                             >  1:158131/1‑141 (MQ=255)
                                                                                         aaaTTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTaaaaa                                             >  1:524433/1‑141 (MQ=255)
                                                                                          aaTTGAGTTGAACGTGATGATTTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCGTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGATaaaaaa                                            <  2:79551/141‑1 (MQ=255)
                                                                                           aTTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTGTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAaac                                           <  2:591330/141‑1 (MQ=255)
                                                                                              gACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGGTATCATTTAAGCaaaaaaaaaaa                                        >  2:554115/1‑140 (MQ=255)
                                                                                               aCTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACACAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACt                                       <  1:270454/141‑1 (MQ=255)
                                                                                                cTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAGAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGATGCTAAAGACCAACTa                                      >  1:295207/1‑141 (MQ=255)
                                                                                                 ttGAACGTGATGATCTATGATCTCTCAAGCCCTTTTTGCATTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGACTGTCTGCTATCATTGAAGCTAAAAAACAACTAg                                     <  1:204182/141‑1 (MQ=255)
                                                                                                 ttGAACGTGATCATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAg                                     <  1:466747/141‑1 (MQ=255)
                                                                                                       gTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTtgatg                               >  1:562695/1‑141 (MQ=255)
                                                                                                       gTGATGATCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGCCTCATAGCTTCATCTTTCATTGAAGCTAAAAAACAACTAGTtgatg                               >  1:534839/1‑141 (MQ=255)
                                                                                                        tgatgaTCTATGATCTTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTtgatga                              <  2:277714/141‑1 (MQ=255)
                                                                                                            gatctatgatctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTTTTTTTTTTTTAAAAAGCACAAAAGATTTAAATGTAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAAtt                          >  2:499410/1‑141 (MQ=255)
                                                                                                            gatctatgatctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAAGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAACtt                          >  2:405424/1‑141 (MQ=255)
                                                                                                             atctatgatctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGTTATTTGTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTg                         <  1:471215/141‑1 (MQ=255)
                                                                                                             atctatgatctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTg                         <  1:168019/141‑1 (MQ=255)
                                                                                                             atctatgacctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGATGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTg                         <  1:309238/141‑1 (MQ=255)
                                                                                                               ttatgatctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCt                       <  1:425386/140‑1 (MQ=255)
                                                                                                               ctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGTAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCt                       <  1:425503/141‑1 (MQ=255)
                                                                                                               caattatttttCAAGACCTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCt                       <  1:291697/133‑1 (MQ=255)
                                                                                                                 atgatctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTgg                     >  2:120495/1‑140 (MQ=255)
                                                                                                                  tgatctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGTTGAg                    >  1:241547/1‑141 (MQ=255)
                                                                                                                   gatctTTCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAgg                   <  1:22430/141‑1 (MQ=255)
                                                                                                                       tttCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATTAAATTGCTGAGGTACt               <  1:413440/141‑1 (MQ=255)
                                                                                                                       tttCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACt               <  1:54601/141‑1 (MQ=255)
                                                                                                                       tttCAAGCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACt               <  1:452978/141‑1 (MQ=255)
                                                                                                                             gCACTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACTATCaaa         >  1:430752/1‑141 (MQ=255)
                                                                                                                             gCACTTTTTGCCTTGGGTAGAAAGGGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATGGCTGAGGTACTATCaaa         >  1:168704/1‑141 (MQ=255)
                                                                                                                                cTTTTTGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAACAACAACTAGTTGATGAAATTGCTGAGGTACTATCAAATTc      >  1:534439/1‑141 (MQ=255)
                                                                                                                                  ttttGCCTTGGGGAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAAATTAAAAGGAGGTGTTTGAATGTCTGCTTTCCTTGAAACTAAAAAAAAACTAGTTGATGAAATTGCTGAGCAAATATCAGATTCAg    >  2:625115/1‑141 (MQ=255)
                                                                                                                                   tttGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACTATCAAATTCAGt   <  2:10330/141‑1 (MQ=255)
                                                                                                                                    ttGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGATGCGTCTGAATTTCTGCTATCATTTAAGCTAAAAAACAACTAGTTGATGAAATGTCTGAGGTACACTCAACTTCAggt  >  2:117030/1‑139 (MQ=255)
                                                                                                                                    ttGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACTATCAAATTCAGtt  >  1:317099/1‑141 (MQ=255)
                                                                                                                                    ttGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACTATCAAATTCAGtt  >  2:165133/1‑141 (MQ=255)
                                                                                                                                    ttGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACTATCAAATTCAGtt  >  1:118665/1‑141 (MQ=255)
                                                                                                                                    ttGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACTATCAAATTCAGtt  >  1:97435/1‑141 (MQ=255)
                                                                                                                                    ttGCCTTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACAAGTTGCTCAACTTGTTGAGGTAGTATCAAGTTCAGtt  >  2:117027/1‑141 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTATTTATAACTTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGAAATTGCTGAGGTACTATCAAATTCAGTT  >  CP000730/583984‑584256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: