Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	307,880	T→C	7.5%	L43P (CTG→CCG)	lytR →	response regulator LytR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	307,880	0	T	C	7.5%	164.2 / 4.4	66	L43P (CTG→CCG)	lytR	response regulator LytR
Reads supporting (aligned to +/- strand):  ref base T (36/24);  new base C (3/2);  total (40/26)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.12e-01

GAGGAATAAATATGAAAGCATTAATCATAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGCACATGACCAATACGCAGTACA  >  CP000730/307742‑308018                                                                                                                                           |                                                                                                                                           gaggaATAAATATGAAAGCATTAATCATAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGa                                                                                                                                          <  1:532621/141‑1 (MQ=255)     aataaggaTGAAAGCATTAATCATTGTTGATGAGCCATTAGCACGTAATGAAGTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGATATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGatcaa                                                                                                                                      <  1:173809/141‑1 (MQ=255)     aataaataTGAAAGCATTAATCATAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGatcaa                                                                                                                                      <  1:256800/141‑1 (MQ=255)     aataaataTGAAAGCATTAATCATAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGatcaa                                                                                                                                      <  1:353944/141‑1 (MQ=255)       taaataTGAAAGCATTAATCATAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAAATGGTGGATTTGAAGAACTTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGatcaatc                                                                                                                                    >  2:469038/1‑141 (MQ=255)       aaaataTGAAAGCATTAATCATAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATAAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGatcaatc                                                                                                                                    <  1:652116/140‑1 (MQ=255)        aaataTGAAAGCATTAATCATAGATGGTGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGatcaatca                                                                                                                                   <  2:282615/141‑1 (MQ=255)             tGAAAGCATTAATCATAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATg                                                                                                                              >  2:368027/1‑141 (MQ=255)                  gCATTAATCAGAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTTGAAGCACTACTGATCAATCAATATGACAtt                                                                                                                         <  2:572347/141‑1 (MQ=255)                              gatgatGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGAt                                                                                                             >  2:11233/1‑141 (MQ=255)                               atgatgAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATCATATTTTTAGATg                                                                                                            >  2:400971/1‑141 (MQ=255)                               atgatgAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACCGATCAATCAATATGACATTATATTTTTAGATg                                                                                                            >  2:107487/1‑141 (MQ=255)                               atgatgAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACCGATAAATCAATATGACATTATATTTTTAGATg                                                                                                            >  2:363448/1‑141 (MQ=255)                               atgatgAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAAGGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGACCAATCAATATGACATTATATTTTTAGATg                                                                                                            >  1:230784/1‑141 (MQ=255)                                tgatgaGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGt                                                                                                           >  2:213386/1‑141 (MQ=255)                                tgatgaGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATAGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGt                                                                                                           >  1:487789/1‑141 (MQ=255)                                ggatgaGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGGTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGt                                                                                                           <  1:416844/140‑1 (MQ=255)                                   tgaGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCaa                                                                                                        >  1:80317/1‑141 (MQ=255)                                    gaGTCATTAGCAAGTAATGAATTAACAGAGTTATTAAATGAAATTGGTGAGTTATAAGAAATTAATGAGGCAGAAAATGTAAAAGATACTTTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAAt                                                                                                       <  2:621096/141‑1 (MQ=255)                                    gaGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAAt                                                                                                       >  2:506587/1‑141 (MQ=255)                                    gaGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGGGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGCCATTATCTTTTTAGATGTCAAt                                                                                                       >  2:131081/1‑141 (MQ=255)                                     aGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAAtt                                                                                                      >  2:179792/1‑141 (MQ=255)                                      gCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAAttt                                                                                                     >  2:30665/1‑141 (MQ=255)                                       ccATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAAtttc                                                                                                    >  1:155161/1‑140 (MQ=255)                                       ccATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTa                                                                                                    >  2:84218/1‑141 (MQ=255)                                       ccATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACAATGTAAGCACTACCGATCACCCAAGATGTCATTATATTTTTAGATGTCAATTTa                                                                                                    >  1:609640/1‑141 (MQ=255)                                       ccATTAGCACGTAATGAATTAACATATTGATTAAACGAACTTGGTGGTTTTGACGAGATTAATGAGGCAGAAAATGTAAAGGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATAATTTTAGATGTCAAGTTa                                                                                                    >  2:275619/1‑141 (MQ=255)                                            aGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGa                                                                                               <  1:69693/141‑1 (MQ=255)                                                      gAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATggg                                                                                     <  1:368027/141‑1 (MQ=255)                                                      gAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATggg                                                                                     >  1:83467/1‑141 (MQ=255)                                                        aTTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAAAGGGAt                                                                                   >  2:126960/1‑141 (MQ=255)                                                             cATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAAt                                                                              >  2:385672/1‑141 (MQ=255)                                                                  ttattaAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGCTGAAAATGGGATCGAATTAGGa                                                                         >  2:212442/1‑141 (MQ=255)                                                                  ttattaAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGGAAATGGGATCGAATTAGGa                                                                         >  1:28760/1‑141 (MQ=255)                                                                     ttaAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCt                                                                      >  2:333123/1‑141 (MQ=255)                                                                     ttaAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCt                                                                      >  2:678283/1‑141 (MQ=255)                                                                     ttaAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATAGAATTAGGAGCt                                                                      >  1:218345/1‑141 (MQ=255)                                                                        aaTGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAggtgatagg                                                                   >  2:68072/1‑134 (MQ=255)                                                                             aaTTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATGAGAAGCTCTACTGATCAATCAATATGACATTATATTTTTATATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGACCTAGGCTTCa                                                              >  2:115758/1‑141 (MQ=255)                                                                                 ggtggtTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAg                                                          >  1:429313/1‑141 (MQ=255)                                                                                   tggtTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAACATGGGATCAAATTAGGAGCTAAGATTCAAAAgga                                                        >  2:62169/1‑139 (MQ=255)                                                                                    ggtTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCAAAGATTCAAAAGAta                                                       >  2:390705/1‑140 (MQ=255)                                                                                        ttGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAag                                                   <  2:658687/141‑1 (MQ=255)                                                                                          gaagaaATTAATGAGGCAGAAAATGTAAAAGAGACGTTGGAAGCACTACTGATCAATAAATATGACAATATATTTTTAGATGTCAATTTAATGGATGAAAATGGGAACGAATTAGGAGCTAAGATTCAAAAGATGAAagag                                                 >  2:257023/1‑141 (MQ=255)                                                                                               aagtAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGATCTAAGATTCAAAAGATGAAAGAGCCAcc                                            <  1:336855/138‑1 (MQ=255)                                                                                               aaTTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCAcc                                            <  2:11713/141‑1 (MQ=255)                                                                                                aTTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTGTATTATTAGATGTCAATATAATGGATGAAAATGGGATCGAATTAGGAGCAAAGATTCAAAAGATGAAAGAGCAACCt                                           >  2:419034/1‑141 (MQ=255)                                                                                                   actctggCAGCAAATGCAAAAGAAACATGGGAAGCACTACTGATCAATCAACATGACATTATATTTTTAGATGTCAATTCAATGGACTAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCg                                        <  1:1493/136‑1 (MQ=255)                                                                                                   aaTGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCg                                        <  2:604354/141‑1 (MQ=255)                                                                                                   aaTGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTAACTCTCCCAGAGGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCg                                        >  1:332018/1‑141 (MQ=255)                                                                                                          cAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTAttt                                 <  2:245728/141‑1 (MQ=255)                                                                                                          aaGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGACTTCGGAGTTGAGATTCAAAAGATGAAAGAGCCACCTGCGATTAttt                                 <  2:286511/140‑1 (MQ=255)                                                                                                             aaaaTGTAAAATAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTg                              <  1:309035/141‑1 (MQ=255)                                                                                                             aaaaTGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTg                              <  1:414944/141‑1 (MQ=255)                                                                                                             aaaaTGTAAAAGAAACATTGGAAGCACTACCGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTg                              <  1:363448/141‑1 (MQ=255)                                                                                                             aaaaTGTAAAAGAAACATTGGAAGCACTACCGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTg                              <  1:107487/141‑1 (MQ=255)                                                                                                                actgaaaaGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGGGATAAtttttagaa                           >  2:525468/5‑137 (MQ=255)                                                                                                                 tGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAAc                          <  1:11233/141‑1 (MQ=255)                                                                                                                     aaaGACACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGca                      <  2:367946/141‑1 (MQ=255)                                                                                                                     aaaGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGca                      >  2:308495/1‑141 (MQ=255)                                                                                                                          aaCATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGCACATGa                 <  2:83467/141‑1 (MQ=255)                                                                                                                           aCATTTGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGCACATGAc                <  2:593463/141‑1 (MQ=255)                                                                                                                           aCATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAACTGGGATCGAATTAGGAGCTAAGATTCAAAAAATGAAAGAGCCCCCTGCGATTCTTTTTGCAACTGCACATGAc                >  2:641575/1‑141 (MQ=255)                                                                                                                           aCATTGGAAGCACTACGGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGCACATGAc                >  1:348235/1‑141 (MQ=255)                                                                                                                                 gAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGCACATGACCAATAc          >  2:688674/1‑141 (MQ=255)                                                                                                                                    gCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCAACCTGCGATTATTTTTGCAAATGCACAAAACCAATACGCa       >  2:449127/1‑141 (MQ=255)                                                                                                                                         actGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGCACATGACCAATACGCAGTACa  >  2:33082/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                           GAGGAATAAATATGAAAGCATTAATCATAGATGATGAGCCATTAGCACGTAATGAATTAACATATTTATTAAATGAAATTGGTGGTTTTGAAGAAATTAATGAGGCAGAAAATGTAAAAGAAACATTGGAAGCACTACTGATCAATCAATATGACATTATATTTTTAGATGTCAATTTAATGGATGAAAATGGGATCGAATTAGGAGCTAAGATTCAAAAGATGAAAGAGCCACCTGCGATTATTTTTGCAACTGCACATGACCAATACGCAGTACA  >  CP000730/307742‑308018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑