Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730111,5160CA28.9% 171.3 / 71.9 121Q196K (CAA→AAA) USA300HOU_0110possible staphylococcal tandem lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (36/50);  new base A (15/20);  total (51/70)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 121 total aligned reads displayed.

TGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATAAAAAAAT  >  CP000730/111377‑111652
                                                                                                                                           |                                                                                                                                         
tGAGGAAGTTAAAGACGACATCTATCTGAAATAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCa                                                                                                                                          >  1:988480/1‑141 (MQ=21)
tGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCa                                                                                                                                          <  2:179315/141‑1 (MQ=255)
  aGGAAGTTAAAGAAGAAAAGATAAAAAATGAGGACGAAAACTTTAAGTTTTTTGCGCAAAATAGCAATTTTAAAGATTTAATGAATTATGAAGATGGAGATATATAATATAATCCAGAGGTGCCGAGGTATTAAGTCCAat                                                                                                                                        >  2:657837/1‑141 (MQ=21)
  aGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAat                                                                                                                                        <  2:481823/141‑1 (MQ=255)
   ggAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCACTTTTACAGATTTAATGAATCATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAata                                                                                                                                       <  1:476260/141‑1 (MQ=255)
   ggAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAata                                                                                                                                       <  1:511603/141‑1 (MQ=255)
   ggAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAata                                                                                                                                       <  1:939895/141‑1 (MQ=255)
   agAAGTTAAAGAAGAAAACAAAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAata                                                                                                                                       <  1:507594/140‑1 (MQ=255)
    gAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAataa                                                                                                                                      >  2:369735/1‑140 (MQ=255)
        ttAAAGAAGAAAACAAAAAAAAAGAAAGCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAAt                                                                                                                                  <  2:573402/141‑1 (MQ=255)
         tAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAAtt                                                                                                                                 >  1:635085/1‑141 (MQ=255)
          aaaGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTa                                                                                                                                >  1:554996/1‑141 (MQ=255)
          aaaGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTa                                                                                                                                >  2:958043/1‑141 (MQ=255)
          aaaGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTa                                                                                                                                >  2:69432/1‑141 (MQ=255)
             ggaggagaCATAAAGAAAGAAATCGAAACCTTTAAGTCTTTTGCGCAATAGAGGAATTGTAAAGATTTAAGGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACt                                                                                                                             <  1:994056/134‑1 (MQ=17)
             gaagaaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACt                                                                                                                             >  1:865229/1‑141 (MQ=255)
               agaaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTaa                                                                                                                           <  2:721890/141‑1 (MQ=255)
                gaaAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAat                                                                                                                          >  2:9664/1‑141 (MQ=255)
                 aaaaCATAAAAAAAGAAATGGAAAGCTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGGGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAatg                                                                                                                         <  2:144131/141‑1 (MQ=255)
                 aaaaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCCACAGAGCAATTTTAAAGATTTAATGAATTATAAAGATGTAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAatg                                                                                                                         <  2:479882/141‑1 (MQ=255)
                 aaaaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAGGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCGATATCAATTAACTAatg                                                                                                                         <  2:359294/141‑1 (MQ=255)
                 aaaaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATAAATTAACTAatg                                                                                                                         >  2:846108/1‑141 (MQ=255)
                  aaaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTGAATGGATTAGAAAGATGGAGATAGATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAatga                                                                                                                        <  1:189157/141‑1 (MQ=255)
                   aaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAatgat                                                                                                                       <  2:841199/141‑1 (MQ=255)
                   aaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAatgat                                                                                                                       <  2:70798/141‑1 (MQ=255)
                   aaCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATACCAATTAACTAatgat                                                                                                                       <  1:390071/141‑1 (MQ=255)
                   aaCATAAAAAAAGAAATCGAAAACGTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAGTGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATAAATTAACTAatgat                                                                                                                       >  2:9592/1‑141 (MQ=17)
                    aCATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAatgatg                                                                                                                      >  1:147109/1‑141 (MQ=255)
                       tAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATACCAATTAACTAATGATGAtt                                                                                                                   >  1:536277/1‑141 (MQ=255)
                       tAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAAATATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGATATTCGGCTAAATATCAATTAACTAATGATGAtt                                                                                                                   >  2:302653/1‑141 (MQ=255)
                       tAAAAAAAGAAATCAAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGAtt                                                                                                                   >  1:649656/1‑141 (MQ=255)
                        aaaaaaaGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATta                                                                                                                  >  2:223033/1‑141 (MQ=255)
                         aaaaaaGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATtat                                                                                                                 >  2:620319/1‑141 (MQ=255)
                         aaaaaaGAAATCGAAAAATTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATtat                                                                                                                 <  2:464262/141‑1 (MQ=255)
                          aaaaaGAAATCGAAATCTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATtata                                                                                                                <  1:354597/141‑1 (MQ=255)
                          aaaaaGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATtata                                                                                                                <  1:844002/141‑1 (MQ=255)
                           aaaaGAAATCGAATACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATaa                                                                                                               <  1:417618/141‑1 (MQ=255)
                           aaaaGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATaa                                                                                                               <  1:865898/141‑1 (MQ=255)
                           aaaaGAAATCGAAAACTTTAAGTTTTTTGCACAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATCGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATaa                                                                                                               <  1:112214/141‑1 (MQ=255)
                           aaaaGAAACCGAAAACTTTAAGTTTTTTGCGCATTATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATaa                                                                                                               <  1:112213/141‑1 (MQ=255)
                               gAAATCGACATCTTTAAGTATTATGCACAATATAGTAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCAAAAAATCAGTTACCTAATGATGATTATAATGTa                                                                                                           <  2:9155/141‑1 (MQ=18)
                               gAAATCGAAAACTTTAAGTTTTTTTCTTAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTTAACTCAAAATCAATAAACTATTGATGATATTATTGTa                                                                                                           >  2:525618/1‑141 (MQ=18)
                               gAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTa                                                                                                           <  1:78418/141‑1 (MQ=255)
                               gAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTa                                                                                                           >  2:797171/1‑141 (MQ=255)
                                aaaTCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTaa                                                                                                          <  2:409093/141‑1 (MQ=255)
                                 aaTCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGAGGGAGATATATCATATCATCCATAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATTATTATAATGTaaa                                                                                                         <  2:177374/141‑1 (MQ=17)
                                 aaTCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTGAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTaaa                                                                                                         <  2:615331/141‑1 (MQ=255)
                                  aTCGAAAACTTTAAGTTTTTTTTTTTTTTTTTCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATTTATAATATAATCCAGAGGTTCCGAGTTATTCAACTCAATATCAATTAACTATTTATGATTATAATTTaata                                                                                                        >  2:347287/1‑139 (MQ=255)
                                  aTCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTaaaa                                                                                                        >  1:825257/1‑141 (MQ=255)
                                  aTCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTaaaa                                                                                                        <  1:69432/141‑1 (MQ=255)
                                      aaaaCTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTCAATATCAATTAACTAATGATGATTATAATGTAAAAAAAt                                                                                                    >  1:331483/1‑141 (MQ=255)
                                       acaCTTTAAGTTTTGTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATCTCAATTAACTAATGATGATTATAATGTAAAACAAtt                                                                                                   <  2:422146/139‑1 (MQ=255)
                                           tttAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACgc                                                                                               <  2:515142/141‑2 (MQ=255)
                                           tttAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATACCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACgc                                                                                               <  1:232745/141‑2 (MQ=255)
                                           ttaagtggttttGGGCAATATAGCAATTTAAAAGATTTAATGAATTAGAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATCTCAATTAGCTAATGATGATTATAATGTAAAACAATTACgc                                                                                               <  2:300793/133‑2 (MQ=17)
                                             tAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTaa                                                                                             <  1:360438/141‑1 (MQ=255)
                                             tAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTaa                                                                                             <  2:323807/141‑1 (MQ=255)
                                              aaGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTaaa                                                                                            >  1:671774/1‑141 (MQ=255)
                                                      tGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGCAAAAGATATGa                                                                                    <  1:847745/141‑1 (MQ=255)
                                                         cgcgtacagacaTTGTAAATCTTTAACCAATTACAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAACTCAATATCAATGAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACAt                                                                                 <  1:347356/130‑1 (MQ=14)
                                                               taGCAATTTTGAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATAAACTGCTGATGATTATAATGTAAAACAATTACGCAAAAGATATGATATACcgac                                                                           <  2:907786/141‑1 (MQ=11)
                                                               taGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCGGCTAAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGCAAAAGATATGATATAccgac                                                                           <  2:760177/141‑4 (MQ=11)
                                                                 gCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACcaacaa                                                                         <  2:588029/141‑1 (MQ=255)
                                                                 gCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACcaacaa                                                                         <  1:223033/141‑1 (MQ=255)
                                                                         aaaGATTTAATGAATTATACCGGTGACAATAGATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAgcg                                                                 >  1:988148/1‑141 (MQ=17)
                                                                          aaGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAgcgc                                                                <  1:583538/141‑1 (MQ=255)
                                                                            gATTTAATGAATTATACAGGTAGTAAGAAATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCg                                                              >  2:214201/1‑141 (MQ=17)
                                                                              tttAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGaa                                                            <  1:14694/141‑1 (MQ=255)
                                                                                 aaTGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAACCAATTACGTAAAAGATATGACATACCAACAAATAAACCGCCGAAGCt                                                         >  1:103367/1‑141 (MQ=255)
                                                                                    gAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCtgtt                                                      <  2:32262/141‑1 (MQ=255)
                                                                                    aaaTTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCtgtt                                                      <  1:653306/140‑1 (MQ=255)
                                                                                      aTTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCtgttgt                                                    <  2:570899/141‑1 (MQ=255)
                                                                                       ttATAAAGATGGAGATATATAATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTtttgt‑t                                                  >  1:601713/1‑141 (MQ=255)
                                                                                          taAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGaa                                               <  1:325141/141‑1 (MQ=255)
                                                                                          taAAGATGGAGATACATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGaa                                               <  1:173116/141‑1 (MQ=255)
                                                                                           acaGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACGAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGaaa                                              <  2:877745/139‑1 (MQ=255)
                                                                                           aaaGATGGAGATATCTCATATAATCCAGCGGTGCCGTGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACCTACCAACAAAGAGCGCGCAGCAGCagttgggcaag                                               >  1:687457/1‑135 (MQ=14)
                                                                                                   agaTATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAgg                                      >  1:615663/1‑141 (MQ=255)
                                                                                                                aaTCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGGTGGTGT‑TTATAGGTACAGGGAATTTAAAAGGt                         >  1:566670/1‑141 (MQ=255)
                                                                                                                aaTACAGAAGTCACGAATTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAAAAAATAAAGCTCAGCAG‑TTTTGTATGAAAGGTACAGGGAATTTAAAAGGt                         >  2:449245/1‑141 (MQ=14)
                                                                                                                  tCCATAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAACGCCGTAGCTGTTGT‑TGAAAGGTACAGTGAATTTAAAAGGTtc                       >  1:700573/1‑141 (MQ=255)
                                                                                                                   ccAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTtca                      <  1:899002/141‑1 (MQ=255)
                                                                                                                     agatGTGCCGAGTTATGCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGCAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTtcatc                    <  2:527362/141‑1 (MQ=255)
                                                                                                                     agagGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTtcatc                    <  1:194754/141‑1 (MQ=255)
                                                                                                                     agagGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTtcatc                    <  2:954212/141‑1 (MQ=255)
                                                                                                                     agagGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTtcatc                    <  1:273101/141‑1 (MQ=255)
                                                                                                                     agagGTGCCGAGTTATTCAGCTCAATATCAATTAACTAACGATGCTTCGTATGAAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTtcatc                    <  1:468817/141‑1 (MQ=17)
                                                                                                                       agGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAGAGAGCAGAAGCTGTTGC‑TGAAAGGTACAGGGAATTTAAAAGATtcagaaa                  >  2:433102/1‑137 (MQ=17)
                                                                                                                         gTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTtcatacgtt                >  2:591911/1‑136 (MQ=255)
                                                                                                                         gTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGtg                >  2:930952/1‑140 (MQ=255)
                                                                                                                           gCCAAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGGCGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCAACAGTTgg              >  2:432222/1‑141 (MQ=255)
                                                                                                                            ccGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAACTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGATTCATCAGTTGGa             <  1:824171/141‑1 (MQ=255)
                                                                                                                                  tATTAAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATaaa       <  1:206233/141‑1 (MQ=255)
                                                                                                                                   aTTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATaaaa      >  1:878004/1‑141 (MQ=255)
                                                                                                                                    ttCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATaaaaa     <  1:525618/141‑1 (MQ=255)
                                                                                                                                    ttCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATaaaaa     <  1:797171/141‑1 (MQ=255)
                                                                                                                                    ttCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTCAAAAGGGTCATCAGTTGGATATaaaaa     >  1:668384/1‑141 (MQ=255)
                                                                                                                                    ttCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAAAAATTACGTAAAAGATATGAAATACCAACAAATAAAGAGCCGAAGCTGTTGA‑TGAAAGGTACAGGGAATGTAAAAGGTTCATCAGTTGGATATaaaaa     >  2:983789/1‑141 (MQ=17)
                                                                                                                                      cAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATaaaaaaa   >  1:218119/1‑141 (MQ=255)
                                                                                                                                       aGCTCAATATACATGAACTAATGATGATTATAATGTAAAACAATTACGTAAAATATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATAAAAAAAt  <  2:399226/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                         
TGAGGAAGTTAAAGAAGAAAACATAAAAAAAGAAATCGAAAACTTTAAGTTTTTTGCGCAATATAGCAATTTTAAAGATTTAATGAATTATAAAGATGGAGATATATCATATAATCCAGAGGTGCCGAGTTATTCAGCTCAATATCAATTAACTAATGATGATTATAATGTAAAACAATTACGTAAAAGATATGACATACCAACAAATAAAGCGCCGAAGCTGTTGT‑TGAAAGGTACAGGGAATTTAAAAGGTTCATCAGTTGGATATAAAAAAAT  >  CP000730/111377‑111652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑