New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =35 (1.050)23 (1.000)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA
19/180 NT 48.8% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA

AGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGT  >  CP000730/512480‑512757
                                                                                                                                            |                                                                                                                                          
aGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTAAACTTAAGAAATAACTTGAATTACTCCCGAAAATTAATTTTa                                                                                                                                            >  2:159030/1‑141 (MQ=255)
 gggCGTTCAGTACAGATGACAAAGGTGTAATTTTCACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTaa                                                                                                                                           <  2:20529/141‑1 (MQ=255)
  cacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaattgacaagataaaaa                                                                                                                                          <  1:313426‑M1/3‑1 (MQ=255)
  cacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaaaa                                                                                                                                          <  2:367719‑M1/3‑1 (MQ=255)
     acctgttcccatgccgaacacagaagttaagctccttagcgtcgctggtagtcgcacttacgttccgctagagtagaacgttgcaaggaagttttttaatcaaattttggttaaacaataaaatgggcaaggtaaAAAAAg                                                                                                                                       <  2:87939‑M1/6‑1 (MQ=255)
     acctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcggttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAg                                                                                                                                       <  1:69522‑M1/6‑1 (MQ=255)
          ttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGGTAtt                                                                                                                                  <  1:225923‑M1/11‑1 (MQ=255)
          gTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTAtt                                                                                                                                  >  1:194595/1‑141 (MQ=255)
          gTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTAtt                                                                                                                                  >  2:14440/1‑141 (MQ=255)
          gTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTAtt                                                                                                                                  >  1:106778/1‑141 (MQ=255)
           tACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAATTATTg                                                                                                                                 >  2:393817/1‑141 (MQ=255)
                         cagaagttaagctccttagcgtcgaggggattcgaacttacgatttatcactgcataacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAatgttgat                                                                                                                   >  1:188087‑M1/116‑138 (MQ=255)
                            aaattaagctccttagcgacaatggtagtcaaacttacgttccgctagagcagaacgttgccaggcagttttataaacaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATaaa                                                                                                                >  2:393462‑M1/113‑141 (MQ=255)
                              aTTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAAt                                                                                                              >  1:101211/1‑141 (MQ=255)
                              aTTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAAt                                                                                                              >  2:339281/1‑141 (MQ=255)
                              aTTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAAt                                                                                                              >  2:55384/1‑141 (MQ=255)
                                       cttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTAtaatta                                                                                                     <  1:146724‑M1/40‑1 (MQ=255)
                                        ttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaatataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTAtaattaa                                                                                                    >  1:55724‑M1/101‑141 (MQ=255)
                                           gcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTc                                                                                                 <  1:178679‑M1/44‑1 (MQ=255)
                                                cAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTc                                                                                            >  1:170968/1‑141 (MQ=255)
                                                  gTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCgg                                                                                         <  2:371319/141‑1 (MQ=255)
                                                   tttGAAAGCCTGTATAGTATTTATTTGTTCAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGt                                                                                        <  1:295305/141‑1 (MQ=255)
                                                    gtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAACATGTATAATTAATTCTTGTCGGTa                                                                                       <  1:226840‑M1/53‑1 (MQ=255)
                                                    gtagtcgaacttacgttccgatagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATCAAATGTATAATTAATTCTTGTCGGTa                                                                                       <  1:241224‑M1/53‑1 (MQ=255)
                                                    aagAAACCCTGTATATTATTTATTTGTGGAGGCAAAGAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTCCATACAACCGTAATAAAATGTATAATTAATCCTTGTTGGTa                                                                                       >  2:180452/3‑141 (MQ=255)
                                                      attcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACGTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAg                                                                                     >  2:87972‑M1/87‑141 (MQ=255)
                                                       ggcgaacttacgttccgctagagtagaacgttgccatgcagttttttaatcaaatttttgttaaaaaataaaatggacaagataaAAAAAGTTATTGACGTAAATGTTGATAAAATGTATGATTATTTCTTGTCGGTAAGa                                                                                    >  2:14844‑M1/86‑141 (MQ=255)
                                                       aaaGCATGTACAGTATTCATTTGCTGAGGCAAACAAAACAACTCAACTTAAGAAATAAATTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGa                                                                                    <  1:27522/141‑1 (MQ=255)
                                                        aaGCCTGGATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAAAGTTACTAGAAGTTTAAATTAATTCTTGTCGGAAAGaa                                                                                   >  2:180308/1‑141 (MQ=255)
                                                         cgaactttcgttcctctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggaaaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGaaa                                                                                  >  2:177295‑M1/84‑141 (MQ=255)
                                                             tGTATAGTATTTATTTGTTGAGGCCCACACAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAATTATTGACTTAAATATCATTAAAATGTGTAATTAATACTTGTAGATAAAAAAAAta                                                                              >  2:357316/1‑140 (MQ=255)
                                                               tataGTATTTATTTGACGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGaa                                                                            >  1:199503/1‑141 (MQ=255)
                                                                acgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaACAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAAc                                                                           <  1:268819‑M1/65‑1 (MQ=255)
                                                                        tatttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGaaaa                                                                   <  1:335990/141‑1 (MQ=255)
                                                                        ctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGaaaa                                                                   >  1:22170‑M1/69‑141 (MQ=255)
                                                                         tagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAAc                                                                  >  2:173111‑M1/68‑141 (MQ=255)
                                                                         atttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAAc                                                                  <  1:396517/141‑1 (MQ=255)
                                                                          agagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTATTGTCGGTAAGAAAAATGAACATTGAAAACt                                                                 <  2:39134‑M1/75‑1 (MQ=255)
                                                                          agagtagaacgttgccaagcagttttttaaacaaattttgtttaaaaaataaaacggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACt                                                                 >  2:59247‑M1/67‑141 (MQ=255)
                                                                          agagtagaaccttcccaggaagtattttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTAGTCGATAAGAAAAATGAAAATTGAAAACt                                                                 >  2:36574‑M1/67‑141 (MQ=255)
                                                                           ttgttgAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTACCGAAAATTAATTTTAAAAAGTTATTGACTTAACTGTTAATAAAATGTATAATTCATTCTTGTCGGTAAGAAAAATGAACATTGacaccta                                                                >  1:171080/1‑135 (MQ=255)
                                                                            tgttgAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTGATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGa                                                               >  1:240100/1‑141 (MQ=255)
                                                                               agaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATg                                                            <  1:259509‑M1/80‑1 (MQ=255)
                                                                                 aGGCAAACAAAACAACTCAAATTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGAc                                                          >  1:242803/1‑141 (MQ=255)
                                                                                  ggCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACa                                                         <  1:55660/141‑1 (MQ=255)
                                                                                  agCAAAAAAAACACAGCAACCTAAGAAATAACTTGAATTAATAACGAAAATTAATTTTAAAAAGTTATTGACTTAACTGTTAATAAAATGTATAAATAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACa                                                         <  1:18365/140‑1 (MQ=255)
                                                                                  acgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACa                                                         <  1:362693‑M1/83‑1 (MQ=255)
                                                                                      aacaaaacaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATAAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAAATAATACTGGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAatat                                                     >  2:236260/1‑141 (MQ=255)
                                                                                      aacaaaacaaCTAAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTAAAAAAGTTATTGACATAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAatat                                                     <  1:379398/141‑1 (MQ=255)
                                                                                         caggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTc                                                  <  1:336196‑M1/90‑1 (MQ=255)
                                                                                         aaaacaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTTTCGGTAAGAAAAATGAACATTGAAAACTGAATGACACTATGTc                                                  >  2:304754/1‑141 (MQ=255)
                                                                                          aggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCa                                                 >  1:336075‑M1/51‑141 (MQ=255)
                                                                                          aaacaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCa                                                 >  2:104387/1‑141 (MQ=255)
                                                                                            acaacTCTACGTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAAc                                               <  2:275467/141‑1 (MQ=255)
                                                                                                  ttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAAt                                         >  1:6710‑M1/43‑141 (MQ=255)
                                                                                                   tttaatcaaattttgggtaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAACTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAAtt                                        >  2:208051‑M1/42‑141 (MQ=255)
                                                                                                    actTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTc                                       >  2:336159/1‑141 (MQ=255)
                                                                                                     ctTAAGCAATAACTTGAATTACTAACGAAGATCAATTTTGAAAAGTTATTGACGTAAATGTTAATAAAATGTATAATAAATTCTTGTCGAGGAACAAGAAGAACATCGAAAACTGAATGGCAATATGAACAAGTTAATTcc                                      >  2:187427/1‑141 (MQ=255)
                                                                                                       tAAGAAATAACTAGAATCACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaa                                    <  1:42772/141‑1 (MQ=255)
                                                                                                         aGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaaaa                                  >  2:39061/1‑141 (MQ=255)
                                                                                                          aaattttggtaaaaaaaaaaaagggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaaaaa                                 >  2:313426‑M1/35‑141 (MQ=255)
                                                                                                           aattttggttaaaaaataaaatggaaaagataaAAAAAGTTATTGACTTAAATGTTGGTAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATACCaaaaaa                                >  2:125444‑M1/34‑141 (MQ=255)
                                                                                                            aaTAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTACATATTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGGAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAAc                               >  1:132897/1‑141 (MQ=255)
                                                                                                                  ttGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACt                         >  1:339612/1‑141 (MQ=255)
                                                                                                                  gctaaaaaataaaagtgacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATATTTAATTCTTGACGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGttcattccataaagcggcatt                         >  2:107115‑M1/27‑133 (MQ=255)
                                                                                                                   ttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAAGGTAACta                        <  2:61712‑M1/116‑1 (MQ=255)
                                                                                                                    taaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACtat                       >  1:365954‑M1/25‑141 (MQ=255)
                                                                                                                     aaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACtata                      >  1:366736‑M1/24‑141 (MQ=255)
                                                                                                                     aaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACtata                      >  1:33317‑M1/24‑141 (MQ=255)
                                                                                                                      aTTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATGAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAAAGATAAAAAAAAAAAACGTAACTATaa                     <  2:170968/141‑1 (MQ=38)
                                                                                                                           taaaatgtacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACAGTGAAAACTGAATGACAATATGTCAACGTTAATTACAAAAAACTGAACTATAAGTTAc                >  2:86418‑M1/18‑141 (MQ=255)
                                                                                                                            aaCGAAAATTAATTGTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACa               <  1:32619/141‑1 (MQ=255)
                                                                                                                              aatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGCCAACTGAGTGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACaaa             <  1:91714‑M1/127‑1 (MQ=255)
                                                                                                                               atggacaagataaAAAAAGTTATTGACTTCAATGTTGATAAAATGTATAATTAATTCTGGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAAGATGTCAAGGTTAATTCCAAAAAACGTAAATAAAAGTTACAAAc            <  2:9460‑M1/128‑1 (MQ=255)
                                                                                                                                   acaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACatta        >  2:24370‑M1/10‑141 (MQ=255)
                                                                                                                                       gatcaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTa    <  2:131630‑M1/136‑1 (MQ=255)
                                                                                                                                         taaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGt  >  2:178679‑M1/4‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                          
AGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGT  >  CP000730/512480‑512757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.