Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073035,9700TC63.0% 1261.0 / inf 1482E194E (GAA→GAG) tpnIS431mec transposase
Reads supporting (aligned to +/- strand):  ref base T (285/260);  new base C (450/477);  total (737/745)
Fisher's exact test for biased strand distribution p-value = 1.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 1496 total aligned reads displayed.

AAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTA  >  CP000730/35838‑36118
                                                                                                                                     |                                                                                                                                                    
         tacccACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGTGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTCTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTg                                                                                                                             <  2:1001426/146‑1 (MQ=0)
          aatcACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGc                                                                                                                            <  1:621220/146‑1 (MQ=1)
                       tCATGTCAGTGTTCGTTTAACTTGCTAGCATGATACTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACtt                                                                                                               >  2:833490/1‑149 (MQ=12)
                         aTGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTC‑TTTTATTTAGAAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTg                                                                                                             >  1:636735/1‑149 (MQ=11)
                          tGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGa                                                                                                            <  1:256439/149‑1 (MQ=255)
                             cAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTGTTCTTTGCTGTATTGATACTTTGATAc                                                                                                         >  1:353693/1‑149 (MQ=12)
                                tgtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCtt                                                                                                      <  1:548837/149‑1 (MQ=11)
                                tgtTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCtt                                                                                                      >  1:16584/1‑149 (MQ=17)
                                 gtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCttt                                                                                                     >  2:790119/1‑148 (MQ=11)
                                 gtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTg                                                                                                     >  1:788028/1‑149 (MQ=11)
                                 gtTCGTTTAACTTGCTAGCATGATGCTAATGTCGTGGCATGGGGAAAATCCGTAGATCTGACGATATCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGTTATCTTg                                                                                                     <  1:979005/149‑1 (MQ=11)
                                 gtTCGATTAACTTGCTAGCATGCTGCTAATTTCGTGGCATGGCGAAAATCCGTATATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTg                                                                                                     <  2:603785/149‑1 (MQ=255)
                                  ttCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGt                                                                                                    <  1:234532/149‑1 (MQ=11)
                                      tttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGTGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtcttt                                                                                                <  1:520087/148‑1 (MQ=12)
                                      cTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtcttt                                                                                                >  1:727652/1‑149 (MQ=32)
                                      cTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtcttt                                                                                                <  2:1102250/149‑1 (MQ=17)
                                        tAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtctttct                                                                                              <  2:1201271/149‑1 (MQ=17)
                                         aaCTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAACAGCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTCTATAG‑CGGGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtctttctt                                                                                             <  2:549/149‑1 (MQ=11)
                                         aaCTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtctttctt                                                                                             <  1:307797/149‑1 (MQ=17)
                                           cTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTAc                                                                                           >  1:409338/1‑149 (MQ=17)
                                           cTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTGTTTATATAG‑AGCGTAAATACATTCAATAACTTTTAAAGTGTTCTTTTTTGTATTGATACTTTGATACCTTTCCTTTCTTAc                                                                                           >  2:802800/1‑149 (MQ=11)
                                            tttgtAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACt                                                                                          <  2:1236932/145‑1 (MQ=21)
                                            ttGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATTTCTTTTCTTTCTTACt                                                                                          >  2:319253/1‑149 (MQ=11)
                                            ttGCTAGCATGATGCTAATTTCGCGGCATGGCGAAAATCCGTAGATCTGCAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACt                                                                                          <  1:143157/149‑1 (MQ=255)
                                             tGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGCAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATCCCTTGTCTTTCTTACtt                                                                                         >  2:284237/1‑149 (MQ=255)
                                              gCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGCAGAGACATACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACttt                                                                                        >  2:341804/1‑149 (MQ=11)
                                               cctggaggatgCTAATTTCGTGGCATGGCGGAAATACGTAGAGCTGAAGTGACCTGCGGTTCTTTTTATATAG‑CGCGCTGATACACTCAATTCCTTTTTGGGTATGCGTTGCTGTATGGATACTTTGATACCGTGTCTTTCTTACTGTa                                                                                       <  2:1318345/142‑1 (MQ=2)
                                                   cATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATCCACATACTCATCTTTGTGGCTGTATTGATACTTTGATACCTTGTCTTTCTTGCTTTAatat                                                                                   >  1:1042398/1‑149 (MQ=11)
                                                        tgCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTAGATACCTTGTGTTTCTTACTTTAATATGACgg                                                                              >  1:683442/1‑149 (MQ=25)
                                                            aaTTTCGTGGCATGGCGAAAATCCGTAGATCAGACGAGTTCTGCATTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGAt                                                                          <  2:1286571/149‑1 (MQ=11)
                                                            aaTTGCGTGGTATGGCGAATAGCCGTAGATCTGAAGAGACCTGCGGTTCTTTGTATATAG‑AGCGTAAATACACTCAACACCTCTTAAAGTATTCTTTGCTGTATTGATACTTTCATACCTTGTCTTTCTTACTTTAATATGACGGTGAt                                                                          <  2:698176/149‑1 (MQ=11)
                                                              tttCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAGTATTACGGTGATCt                                                                        >  1:1175489/1‑149 (MQ=11)
                                                              tttCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATACCCTGTCTTTCTTACTTTAATATGACGGTGATCt                                                                        >  2:1173546/1‑149 (MQ=255)
                                                              tttCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCt                                                                        <  1:327167/149‑1 (MQ=255)
                                                               ttCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCtt                                                                       <  2:525919/149‑1 (MQ=255)
                                                                 cGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGc                                                                     <  2:957484/149‑1 (MQ=255)
                                                                 cGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGc                                                                     <  2:1187343/149‑1 (MQ=255)
                                                                  gTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCt                                                                    <  2:1260664/149‑1 (MQ=255)
                                                                   tGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGccc                                                                   >  1:1097192/1‑147 (MQ=37)
                                                                    ggaaTGGCGAAAATCCGGAGAACTGCAGAGACCGGCGGTCGTCTGTATATAG‑AGCGAAAATACACTCAATATCTTTCAATGTATTCTTTGCTGTATTGATACTTTGATAACTTGTCTTTCTTACTTTAATATGACGGTGACCTTGCTCa                                                                  <  2:102193/146‑1 (MQ=11)
                                                                       aTGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATg                                                               <  1:1148933/149‑1 (MQ=255)
                                                                       aTGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATg                                                               <  2:245277/149‑1 (MQ=255)
                                                                        tGGGGAAAAGCCGGCGATCTGAAGAGACCTACGGTTCTCTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTAATCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGa                                                              <  1:278099/149‑1 (MQ=11)
                                                                          gCGAAAAGCCCTAGAGCTGAAGAGACCGGCGGTTCTTTTTATAGAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGGATTGAGACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAgg                                                            <  2:42806/149‑1 (MQ=11)
                                                                           ggAAAATCCTTAGATCTGACGAGTCCTACGGTTCTGTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAGCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGt                                                           <  1:570941/148‑1 (MQ=11)
                                                                             aaaaTCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTCCTTTAATATGACGGTGATCTTGCTCAATGAGCTTa                                                         >  2:512587/1‑149 (MQ=11)
                                                                              aaaTTCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTAAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTAt                                                        <  2:146691/149‑1 (MQ=11)
                                                                              aaaTCCCGAAATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTAt                                                        <  2:22005/149‑1 (MQ=11)
                                                                                aTCCGTAGATCTGAAGAGACCTGCGGTTCCTTTTATATAG‑AGCGTAAATACACTCAATACCGTTTAAAGTATTCTTTGCTGTATTGACACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTc                                                      <  1:706163/149‑1 (MQ=255)
                                                                                aTCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTc                                                      <  1:659011/149‑1 (MQ=255)
                                                                                 tCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCa                                                     <  2:652863/149‑1 (MQ=255)
                                                                                       gATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATAtt                                               <  2:40778/149‑1 (MQ=39)
                                                                                       gATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATAtt                                               >  1:81032/1‑149 (MQ=38)
                                                                                           tGAAGAGACCTGCGGTTCTTTTTATATAT‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGa                                           <  2:192409/149‑1 (MQ=255)
                                                                                           tGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGa                                           <  1:1218886/149‑1 (MQ=255)
                                                                                             aaGAGACCTACGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATg                                         <  2:627587/149‑1 (MQ=255)
                                                                                              agagACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAATATTCTTTGCTATATTGATACTTTAATACCTTGTCTTCCTTACTTTAATATGACGGTGATCTTGCTCAAGGAGGTTATTCAGATATTTCGAtct                                        >  2:171563/1‑147 (MQ=11)
                                                                                               acgaccctcGGCTCTTTTGTTCTGG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTCCTTACTTGAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTa                                       <  1:590421/141‑1 (MQ=11)
                                                                                                  aCCTGCGGTTCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACaa                                    <  2:264453/149‑1 (MQ=255)
                                                                                                           tCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCa                           <  1:490755/149‑1 (MQ=255)
                                                                                                           tCTTTTTATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTcg                           >  1:1068009/1‑148 (MQ=255)
                                                                                                            cTTTTGACATAG‑AGCGTAAATACATTCAATACCGTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAg                          <  1:83518/149‑1 (MQ=14)
                                                                                                             tttttATATAG‑AGCGTAAATACACTCAATCCCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAgg                         <  2:71846/149‑1 (MQ=255)
                                                                                                              ttttATATAG‑AGCGTAAATACACTCAATTCCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgt                        <  2:92738/149‑1 (MQ=255)
                                                                                                              ttttATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgt                        >  1:501701/1‑149 (MQ=255)
                                                                                                              ttttATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATCTCGATGTACAATGGCAGTCAGgt                        <  1:1000263/149‑1 (MQ=255)
                                                                                                               tttATATAG‑AGCGTATATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtt                       <  2:581674/149‑1 (MQ=255)
                                                                                                               tttATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTGGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtt                       >  1:1331419/1‑149 (MQ=255)
                                                                                                               tttATATAG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTGAGgtt                       >  2:975029/1‑149 (MQ=255)
                                                                                                                ttATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTATTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGTTGTACAATGACAGTCAGgttt                      >  2:1130167/1‑149 (MQ=255)
                                                                                                                  atataG‑AGCGTAAATACACTCAATACCTTTTAGAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTGCAATGGCAGTGAGgtttaa                    >  1:855232/1‑149 (MQ=14)
                                                                                                                  atataG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTGGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCCGgtttaa                    >  2:1155665/1‑149 (MQ=255)
                                                                                                                     taG‑AGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCGGTCAGgtttaagtt                 <  2:853388/149‑1 (MQ=255)
                                                                                                                       g‑agCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGTGGTTGTTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagttta               >  1:89133/1‑149 (MQ=255)
                                                                                                                       g‑agCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagttta               <  1:214414/149‑1 (MQ=255)
                                                                                                                       g‑agCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagttta               >  1:38017/1‑149 (MQ=255)
                                                                                                                         agCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTGTTTCTTACTTTAATATGACGGTGATCCTGCTCAATGAGGTTATTAAGATATTTAGATGTACAATGGCAGTCAGgtttaagtttaa              >  2:489682/1‑149 (MQ=14)
                                                                                                                         agCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagtttaa              >  2:384820/1‑149 (MQ=255)
                                                                                                                         agCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTATTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGCTATTTTGATGTACAATGGCAGCCAGgtttaagtttaa              >  1:1250830/1‑149 (MQ=14)
                                                                                                                          gCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTATTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACATTCAGGTTTAAGTTTaaa             >  2:1050896/1‑149 (MQ=255)
                                                                                                                           cGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCCGATATTTCTATGTACAATGACAGTCAGGTTTAAGTTTtaaa            >  1:1309367/1‑149 (MQ=14)
                                                                                                                           cGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAACTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAAGGTTAAGTTTaaaa            >  2:868821/1‑149 (MQ=255)
                                                                                                                           cGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTaaaa            >  1:753895/1‑149 (MQ=255)
                                                                                                                             tAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGAGAGTCAGGTTTAAGTTTAAAAGc          >  1:388076/1‑149 (MQ=255)
                                                                                                                             tAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGCGGTTATTCAGATATTTCGATGTAGAATGGCAGTCAGGTTTAAGTTTAAAAGc          <  2:732985/149‑1 (MQ=255)
                                                                                                                             tAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGc          >  1:188467/1‑149 (MQ=255)
                                                                                                                             tAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGc          <  1:459469/149‑1 (MQ=255)
                                                                                                                              ataTACACGCATTACTTTTTAAACTATTCTTTGCTGTATTGATACTCTTATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCt         <  2:365503/147‑1 (MQ=14)
                                                                                                                              aaaTTCATTCTATACCTTTTTAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCt         <  2:445537/149‑1 (MQ=14)
                                                                                                                              aaaTACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCt         <  1:1021222/149‑1 (MQ=255)
                                                                                                                              aaaTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCACATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCt         <  2:910736/149‑1 (MQ=255)
                                                                                                                               aaTACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCACTGTGGGTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCtt        <  1:921680/149‑1 (MQ=14)
                                                                                                                               aaTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCtt        <  1:1271969/149‑1 (MQ=255)
                                                                                                                               aaTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCtt        <  2:76132/149‑1 (MQ=255)
                                                                                                                                aTACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGCTATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGCTGTACAATGACAGTCAGGTTTAAGTTTAAAAGCttt       >  1:435701/1‑149 (MQ=255)
                                                                                                                                 tACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATAATTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCCGGTTTAAGTTTAAAAGCTGTa      >  2:1082715/1‑149 (MQ=11)
                                                                                                                                 tACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCACTGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCtttc      >  1:945170/1‑148 (MQ=255)
                                                                                                                                  acacTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTaa     <  1:1128333/149‑1 (MQ=255)
                                                                                                                                  acacTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTaa     <  1:1193577/149‑1 (MQ=255)
                                                                                                                                  acacTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTaa     <  1:1294267/149‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                                    
AAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAG‑AGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTA  >  CP000730/35838‑36118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑