New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 5589146 (0.070)22 (0.260) 13/256 7.1 79.5% intergenic (+127/‑43) USA300HOU_t0012/rrl2 tRNA‑Ile/23S ribosomal RNA
?CP000730 2179617 = NA (NA)intergenic (‑61/+251) rrl4/rrs4 23S ribosomal RNA/16S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

ACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCC  >  CP000730/558774‑559001
                                                                                                                                            |                                                                                       
aCTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACt                                                                                         <  2:485116/141‑1 (MQ=35)
  tttggCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTca                                                                                       <  1:535237/138‑1 (MQ=17)
  ttAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTca                                                                                       >  1:33869/1‑141 (MQ=34)
     ggCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACaa                                                                                    >  1:567114/1‑141 (MQ=32)
      gCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAg                                                                                   <  2:866083/141‑1 (MQ=31)
                                       tttgaatataaTATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACAt                                                  <  1:631715/132‑1 (MQ=0)
                                                                                       gttgaaaTAAGCTTGAATGCAGAAGAAATAGTCGCTAGTGTTCGAGAGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGTGCGCACGGTGGTTGCCTTGGCACNAGAAGcc  >  2:772745/5‑141 (MQ=1)
                                                                                                                                            |                                                                                       
ACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAGATTAATAACGCGTTTCCTGTAGGATGGAAACATAGATTAAGTTATTAAGGGCGCACGGTGGATGCCTTGGCACTAGAAGCC  >  CP000730/558774‑559001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.