| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP000730 | 2,679,803 | G→T | G96V (GGA→GTA) | cbpD → | possible secretory antigen |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,679,803 | 0 | G | T | 98.7% | 258.4 / ‑3.0 | 76 | G96V (GGA→GTA) | cbpD | possible secretory antigen |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (33/42); total (34/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.69e-01 | |||||||||||
AAACGTCGCGCACAAGTCGGTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAAC > CP000730/2679667‑2679936 | aaaCGTCGCGCACAAGTCGGTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTatat > 1:706119/1‑141 (MQ=255) aaCGTCGCGCACAAGTCGGTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTAtatt > 1:437077/1‑141 (MQ=255) aaCGTCGCGCACAAGTCGGTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTAtatt > 2:824430/1‑141 (MQ=255) cGTCGCGCACAAGTCGGTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTAtattat < 2:408013/141‑1 (MQ=255) gTCGCGCACAAGTCGGTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATg < 2:114175/141‑1 (MQ=255) gcACAAGTCGGTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACAt > 2:639467/1‑141 (MQ=255) cacaAGTCGGTAAACCTGTGTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACAGCAGTATATTATGGACATg > 2:111813/1‑141 (MQ=255) caAGTCGGTAAACCTGTTTCTAAGAGATGGGGAAATGCTAAAAAGTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAAGCAACTGCAGTATATTATGGACATGTc < 1:618383/141‑1 (MQ=255) gTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAgttg > 2:270195/1‑141 (MQ=255) tAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAgttgt < 1:864520/141‑1 (MQ=255) aaCCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGttgttg > 1:414626/1‑141 (MQ=255) ccTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGaa < 2:437077/141‑1 (MQ=255) ccTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGaa > 1:979596/1‑141 (MQ=255) ccTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGaa > 1:513421/1‑141 (MQ=255) cTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAAc < 1:431968/141‑1 (MQ=255) ttCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGt < 1:505954/141‑1 (MQ=255) aTAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGtatata < 1:564812/141‑1 (MQ=255) aTGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATaaaaa > 1:703856/1‑141 (MQ=255) ggggCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACg > 1:371930/1‑141 (MQ=255) gggCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACgg < 2:399919/141‑1 (MQ=255) gggCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACgg < 2:399946/141‑1 (MQ=255) ggCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGgt > 1:985870/1‑141 (MQ=255) aTGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGgtagta > 2:983723/1‑141 (MQ=255) gCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTAtt < 1:54933/141‑1 (MQ=255) gCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTAtt < 2:74410/141‑1 (MQ=255) gCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTAtt < 2:717757/141‑1 (MQ=255) gCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTAtt < 1:621816/141‑1 (MQ=255) cTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTa < 1:701962/141‑1 (MQ=255) cTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTa < 1:612080/141‑1 (MQ=255) aaaaaTTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAgttgt < 2:889880/110‑1 (MQ=255) aaaaaTTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAgttgt > 1:889880/1‑110 (MQ=255) aaaaTTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGGCATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAg < 2:931037/141‑1 (MQ=255) aaaTTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGt > 1:707919/1‑141 (MQ=255) aaaTTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGt < 1:314493/141‑1 (MQ=255) cAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACaa < 1:474351/141‑1 (MQ=255) cAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACaa > 1:466241/1‑141 (MQ=255) aaTGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAAc < 1:788178/141‑1 (MQ=255) tGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGtatat < 2:273750/106‑1 (MQ=255) tGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGtatat > 1:273750/1‑106 (MQ=255) aCGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTa > 2:49851/1‑141 (MQ=255) tAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCg < 1:767660/141‑1 (MQ=255) tAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCg < 2:643269/141‑1 (MQ=255) aaaTCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGc < 2:979596/141‑1 (MQ=255) aaaTCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGc < 2:371930/141‑1 (MQ=255) aaaTCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCGGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGc > 1:803453/1‑141 (MQ=255) aaTCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGcc > 2:962066/1‑141 (MQ=255) aTCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGccc > 1:513533/1‑141 (MQ=255) aTCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGccc < 2:243476/141‑1 (MQ=255) tCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCa < 1:177566/141‑1 (MQ=255) cAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCAt < 1:991745/141‑1 (MQ=255) cAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCAt < 1:914577/141‑1 (MQ=255) aaaaTATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCAtt > 2:177425/1‑141 (MQ=255) aaTATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTaa < 2:92515/141‑1 (MQ=255) gcgcCTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAaatac < 1:445030/141‑1 (MQ=255) gCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAaatac < 2:781435/141‑1 (MQ=255) gCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAaatac < 2:941380/141‑1 (MQ=255) acCAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACt > 1:316220/1‑141 (MQ=255) cAAGAAAATTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAGTACAATACACGTGTACTaa > 2:433845/1‑141 (MQ=255) aTTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAGGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCaaaaa > 1:471061/1‑141 (MQ=255) aTTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGcc > 2:13385/1‑107 (MQ=255) aTTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGcc < 1:13385/107‑1 (MQ=255) aTTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCaaaaa > 2:905839/1‑141 (MQ=255) aTTTGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGAACTAAGCaaaaa > 2:184750/1‑141 (MQ=255) ttGCTGTCATGCAATCAACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAgg > 2:189426/1‑141 (MQ=255) tGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGgc > 1:1025349/1‑141 (MQ=255) tGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGgc > 2:942538/1‑141 (MQ=255) tGCTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGgc > 1:52287/1‑141 (MQ=255) cTGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACTGTAGTATTAAAGTTTCAGAATACAACTTTTGTCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGgcag > 1:617088/1‑141 (MQ=255) tGTCATGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGgcagc < 1:527737/141‑1 (MQ=255) aTGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGt < 1:321783/141‑1 (MQ=255) aTGCAATCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGt < 2:755538/141‑1 (MQ=255) aaTCAACNGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACt < 2:771557/141‑1 (MQ=255) tCAACTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACttt < 1:707136/141‑1 (MQ=255) aCTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAAc > 1:567348/1‑141 (MQ=255) aCTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAAc < 1:933509/141‑1 (MQ=255) aCTGCAGTATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAACAAAAAGGCAGCACGTAACTTTAAc < 2:129834/141‑1 (MQ=255) | AAACGTCGCGCACAAGTCGGTAAACCTGTTTCTAATAGATGGGGCAATGCTAAAAATTGGTATTACAATGCACGTAAATCAAAATATGCGACTGGTCGTACACCAAGAAAATTTGCTGTCATGCAATCAACTGCAGGATATTATGGACATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAAC > CP000730/2679667‑2679936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |