| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 365040 | 62 (1.630) | 4 (0.120) | 4/246 | 4.7 | 5.8% | intergenic (+50/+55) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter |
| ? | CP000730 | = 365070 | 73 (2.110) | intergenic (+80/+25) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/364891‑365040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccccgtcacTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAGT < CP000730/365070‑364933 TAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCTAAGCTAAA > 2:358108/1‑141 AACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACC > 2:108104/1‑141 AACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACC > 1:9411/1‑141 CAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCC > 1:298062/1‑141 AGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGT > 2:197139/1‑141 GGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCCTGGCAAAGCTAAACCCCGTC > 1:3897/1‑141 GAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCA > 1:253170/1‑141 AGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC < 1:203171/141‑1 AGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC < 2:254523/141‑1 TTGGTTCAACCCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGAC < 2:127014/141‑1 TTCAACTCTAGCTTCAATCATTTCAGGATCAATCGTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGG > 2:15637/1‑141 TCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGT < 2:297373/141‑1 aacacTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAACTTCATGGCAAAGCTCAACCCCGTCACTACGTTATGATGCGCTGTTGCGCCAACTTGGTGCCGCAGTTTAGCTTTGACATGAATTTAATTTAGGTAC < 1:15637/136‑1 ACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCA < 1:209724/37‑1 ACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCA > 2:209724/1‑37 AACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTG < 1:150298/141‑1 AACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTG > 1:235859/1‑141 CGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCA < 1:219210/141‑1 TCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATGTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAG < 1:51237/141‑1 CACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAGT < 1:192893/141‑1 ACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCA > 2:133383/1‑98 ACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCA < 1:133383/98‑1 TAAACAAGGAGAAAAAGTTGCATCCTTTGCAATGAGGTTGCTACTTGGTTCAACTCTAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/364891‑365040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccccgtcacTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTAGCTTTGCCATGAATTTAATTTAGGTACTTCGATTCATTTACAATACTAAGCCAATGATTGATCCTGAAATGATTGAAGCTAGAGTTGAACCAAGT < CP000730/365070‑364933 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |