| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 514469 = | 53 (1.390) | 24 (0.780) +AGCAATATCACTTTAACCAAAAAATA |
3/218 | 4.7 | 35.9% | intergenic (+137/‑237) | rrs1/rrl1 | 16S ribosomal RNA/23S ribosomal RNA |
| ? | CP000730 | = 2179798 | NA (NA) | intergenic (‑242/+70) | rrl4/rrs4 | 23S ribosomal RNA/16S ribosomal RNA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/514607‑514469‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTG < CP000730/2179798‑2179750 |||||||||||||||||||||||||| aGAACACTCGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAG > 2:322438/2‑141 GAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGC > 1:86996/1‑141 ACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAA > 2:235267/1‑141 ACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATA < 2:366322/141‑1 CTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATAT > 1:302267/1‑141 CTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATAT > 2:433684/1‑141 CTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATAT > 1:70756/1‑141 TAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATC < 2:351018/141‑1 GCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCAC > 2:43462/1‑141 GATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTT > 1:329452/1‑141 ATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTT > 2:120754/1‑141 TATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAA > 2:179478/1‑141 ATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAAC < 1:147875/141‑1 ATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAAC < 2:399150/141‑1 ATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAAC < 1:360860/141‑1 TTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACC > 2:133231/1‑141 TTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCA < 1:15238/141‑1 ATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTACTCCAGCGCACGCCTAAGCAATATAACTTTAACCAAAAAA > 1:425398/1‑141 AATTCATGCTTATTTAAAACTCGTTATTCACTCGGTTTTGCTTGGTAAAATTTATATTTTACTTACTTGTCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAACAATATCACTTTAGCCAAAAAATAT > 2:80964/1‑141 AATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATAT < 1:322438/141‑1 AATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATAT > 2:323901/1‑141 AATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATAT > 1:90973/1‑141 AATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATAT < 2:86996/141‑1 TTCACGCTTATTTAAAACTCTTTATTCCCTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCTCTTTAACCAAAAAATATTT > 2:177580/1‑141 TTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTT > 1:239748/1‑141 TCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTG < 1:303175/141‑1 TCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTG < 1:252562/141‑1 CAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGA > 2:59021/1‑141 AAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAA > 2:389093/1‑141 GCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATG < 1:243649/141‑1 GCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATG < 2:234430/141‑1 GCTTATTTAAAACTCTTTATTCACGCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATG < 2:31448/141‑1 CTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTCCAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATGT > 2:430093/1‑141 CTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATGT < 1:304970/141‑1 TTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATG < 1:142796/125‑1 TTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATG > 2:142796/1‑125 TCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATGTTTATTTAACATTCAAATAT > 1:294454/1‑141 taagtaaGTAAAATATAGATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAA < 1:252852/102‑1 taagtaaGTAAAATATAGATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAA > 2:252852/8‑109 GCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATGTTTATTTAACATTCAAATATTTTTTGGTAAAg > 1:320119/1‑140 AAACTCTATGTTTTACTTACTGATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATAT < 2:237925/141‑1 AATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTGTAGTCAATCGCTCGCATAAGCAATATCACTTTAACCAAAAAATATTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTG < 1:263825/141‑1 ATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAAC > 2:285018/1‑78 ATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATATCACTTTAAC < 1:285018/78‑1 TAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATA > 2:199502/1‑50 TAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGCAATA < 1:199502/50‑1 |||||||||||||||||||||||||| CGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/514607‑514469‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTG < CP000730/2179798‑2179750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |