| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 671622 = | 47 (1.240) | 5 (0.140) | 5/256 | 4.4 | 9.8% | intergenic (+247/‑141) | argS/USA300HOU_0614 | arginine‑‑tRNA ligase/deoxyribonuclease (pyrimidine dimer) |
| ? | CP000730 | = 1072271 | 47 (1.300) | intergenic (‑743/+62) | iraE/folD | possible chitinase/bifunctional methylenetetrahydrofolate dehydrogenase (NADP(+))/methenyltetrahydrofolate cyclohydrolase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACATTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/671767‑671622‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgact‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCT < CP000730/1072271‑1072225 AACATTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGT > 2:58455/1‑141 CATTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTG > 2:346098/1‑141 TTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGAg < 1:341113/141‑2 TTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT < 2:83829/141‑1 ATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAATTCGCTTGTAACAAGCTTTTTTC < 1:58455/141‑1 tATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATT < 2:144159/140‑1 TATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:346098/141‑1 CGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAA < 1:277489/141‑1 AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCT < 1:254284/141‑1 AACATTTACACCCTCCATTTTAGAGGGAGTGGGACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/671767‑671622‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgact‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCT < CP000730/1072271‑1072225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |