| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1966974 = | 32 (0.840) | 5 (0.140) | 5/252 | 4.3 | 12.8% | coding (29/111 nt) | USA300HOU_1826 | hypothetical protein |
| ? | CP000730 | 1966998 = | 38 (1.070) | coding (5/111 nt) | USA300HOU_1826 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTAGTCATTACCACTATTAATAATTGATTAAAATTACTATAATGAATCTTGCGAGATATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGACATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1967120‑1966974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacatttaATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTATCATTACTTCTAAATATCTCGCAAGATTCATTATAGTAATTTTAATCAATTATTAATAGTGGTAATGACTAGTTTATCATCGTATAATA > CP000730/1966998‑1967137 CTAGTCATTACCACTATTAATAATTGATTAAAATTACTATCATCAATCTTGCGAGATATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGA < 2:192090/141‑1CTAGTCATTACCACTATTAATAATTGATTAAAATTACTATAATGAATCTTGCGAGATATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGA > 2:140572/1‑141CTAGTCATTACCACTATTAATAATTGATTAAAATTACTATAATGAATCTTGCGAGATATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGA > 1:334203/1‑141 AGTCATTACCACTATTAATAATTGATTAAAATTACTATAATGAATCTTGCGAGATATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGACA < 1:152073/141‑1 TTGCGAGATATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGA < 2:263330/93‑1 TTGCGAGATATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGA > 1:263330/1‑93 ATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGACATTTAATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTA > 2:81943/1‑141 ATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGACATTTAATCATATAACTATTTATTGTAAATTTAAATTCTAAAGTTTATTATTTTTTATCATTACTTCTAAATATTTCGCAA > 2:310129/1‑141 ATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGACATTTAATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTATCATTACTTCTAAATATCTCGCAAGATTCATTATAt > 2:81312/1‑140 TGTCAGTTTTATGACATTTAATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTATCATTACTTCTAAATATCTCGCAAGATTCATTATAGTAATTTTAATCAATTATTAATAGTGGTAATGACT < 1:81943/141‑1 AGTTTTATGACATTTAATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTATCATTACTTCTAAATATCTCGCAAGATTCATTATAGTAATTTTAATCAATTATTAATAGTGGTAATGACTAGTT > 2:63722/1‑141 ATTTAATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTATCATTACTTCTAAATATCTCGCAAGATTCATTATAGTAATTTTAATCAATTATTAATAGTGGTAATGACTAGTTTATCATCGTAT < 1:63722/141‑1 TTAATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTATCATTACTTCTAAATATCTCGCAAGATTCATTATAGTAATTTTAATCAATTATTAATAGTGGTAATGACTAGTTTATCATCGTATAA < 1:361468/141‑1 AATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTATCATTACTTCTAAATATCTCGCAAGATTCATTATAGTAATTTTAATCAATTATTAATAGTGGTAATGACTAGTTTATCATCGTATAATA > 2:311903/1‑141 CTAGTCATTACCACTATTAATAATTGATTAAAATTACTATAATGAATCTTGCGAGATATTTAGAAGTAATGATACAAAATAATGGACTTTAGAATTTAAATTTACAATAAATAGTTCTATGATTAAATGTCAGTTTTATGACATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1967120‑1966974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgacatttaATCATAGAACTATTTATTGTAAATTTAAATTCTAAAGTCCATTATTTTGTATCATTACTTCTAAATATCTCGCAAGATTCATTATAGTAATTTTAATCAATTATTAATAGTGGTAATGACTAGTTTATCATCGTATAATA > CP000730/1966998‑1967137 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |