New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	671577 =	40 (1.050)	5 (0.140)	5/256	4.4	10.7%	intergenic (+202/‑186)	argS/USA300HOU_0614	arginine‑‑tRNA ligase/deoxyribonuclease (pyrimidine dimer)
	?	CP000730	671629 =	46 (1.280)					intergenic (+254/‑134)	argS/USA300HOU_0614	arginine‑‑tRNA ligase/deoxyribonuclease (pyrimidine dimer)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTT  >  CP000730/671437‑671714                                                                                                                                             |                                                                                                                                          tttAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCagtag                                                                                                                                           <  1:59090/141‑1 (MQ=255)             aCATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGa                                                                                                                               <  1:402038/141‑1 (MQ=255)             aCATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGa                                                                                                                               >  2:402038/1‑141 (MQ=255)              cATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGaa                                                                                                                              <  2:207096/141‑1 (MQ=255)                     gggAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGc                                                                                                                       <  2:142199/141‑1 (MQ=255)                     gggAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGc                                                                                                                       >  2:135182/1‑141 (MQ=255)                         aTGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGt                                                                                                                   >  2:427018/1‑141 (MQ=255)                                gTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGc                                                                                                            <  1:139893/141‑1 (MQ=255)                                      gAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCtttttt                                                                                                      >  1:29500/1‑141 (MQ=255)                                                aaGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGt                                                                                            >  1:197325/1‑141 (MQ=255)                                                      aaCACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCt                                                                                      >  1:369849/1‑141 (MQ=255)                                                         acaGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGc                                                                                   >  2:70353/1‑141 (MQ=255)                                                             ttGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCcggc                                                                               >  1:16515/1‑141 (MQ=255)                                                               ggATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCcggcgg                                                                             <  1:130245/141‑1 (MQ=255)                                                                     tctGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGcccc                                                                       <  1:70353/141‑1 (MQ=255)                                                                         cacaACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcaaca                                                                   <  1:153502/141‑1 (MQ=255)                                                                         cacaACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCcaaca                                                                   >  2:151561/1‑141 (MQ=255)                                                                         cacaACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGACGGCGGGGCCCcaaca                                                                   >  2:151507/1‑141 (MQ=255)                                                                            aaCTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAag                                                                >  1:104576/1‑141 (MQ=255)                                                                                 cATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGaaa                                                           >  2:124249/1‑141 (MQ=255)                                                                                     agagagCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTgg                                                       >  1:385574/1‑141 (MQ=255)                                                                                        gagCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGAtt                                                    <  1:80601/141‑1 (MQ=255)                                                                                               agaCATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAtt                                             >  2:232708/1‑141 (MQ=39)                                                                                                gaCATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAAttt                                            >  2:195687/1‑141 (MQ=39)                                                                                                 aCATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTc                                           <  2:420831/141‑1 (MQ=38)                                                                                                      aaTCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAg                                      >  1:299527/1‑141 (MQ=39)                                                                                                           aTGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAAt                                 >  1:412779/1‑141 (MQ=39)                                                                                                            tGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATg                                <  2:27701/141‑1 (MQ=37)                                                                                                               tCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGGAATTGGATTCCCAATTTCTACAGACAATGCaa                             <  2:103963/141‑1 (MQ=38)                                                                                                                cTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAg                            <  1:277998/141‑1 (MQ=38)                                                                                                                       ctACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGt                     >  1:34308/1‑141 (MQ=35)                                                                                                                               ttATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTTTTTTTTTTTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCAACAGACAATGCAAGTTGGGGTGGgacgac             >  2:412472/1‑141 (MQ=11)                                                                                                                                 ataATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTTTTTTTTTTTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATCCAAGTTGGGGTGGGAcgacga           >  2:212816/1‑141 (MQ=11)                                                                                                                                 ataATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGAcgacga           >  1:281918/1‑141 (MQ=35)                                                                                                                                    aTGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGaaat        >  1:49890/1‑141 (MQ=33)                                                                                                                                    aTGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGaaat        >  1:110222/1‑141 (MQ=33)                                                                                                                                     tGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGaaata       <  1:379545/141‑1 (MQ=32)                                                                                                                                          gtagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGaaa         <  1:86347/134‑1 (MQ=33)                                                                                                                                          gtagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGaaa         >  2:86347/1‑134 (MQ=33)                                                                                                                                          gtagtTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAAAAACGCCAAATTCAAAAAACACTTTATACAGCCACTGAAAGTTGGGGTGGGACGACGAAATAAAttt  >  1:263858/1‑141 (MQ=11)                                                                                                                                             |                                                                                                                                          TTTAGGTATGTGACATATTGGGGAATGCTTAGTATGTGAATAAGGTTAAGAGGAACACAGTTGGATGCTCTGCACAACTGCATAAGAGAGCCTGAGACATAAATCAATGTTCTATGCTCTACAAAGTTATAATGGCAGTAGTTGACTGAACGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTAGTCAACCTTGCCGGCGGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTT  >  CP000730/671437‑671714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.