Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,455,692 Δ1 bp 100% coding (1210/1260 nt) USA300HOU_2315 → hypothetical membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,455,6920G.88.6% 396.7 / 34.8 105coding (1210/1260 nt)USA300HOU_2315hypothetical membrane protein
Reads supporting (aligned to +/- strand):  ref base G (2/1);  major base . (42/51);  minor base A (6/3);  total (50/55)
Fisher's exact test for biased strand distribution p-value = 3.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

Only 100 of 111 total aligned reads displayed.

CAGCAGAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTT  >  CP000730/2455558‑2455825
                                                                                                                                      |                                                                                                                                       
cagcagAAGCAGTTAACCAAGCACCACAACGTGACGATTTAACAAACGATTCAAAGGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaat                                                                                                                                   <  1:15613/141‑2 (MQ=255)
  gcagAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaatta                                                                                                                                 <  1:787006/141‑4 (MQ=255)
  gcagAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCAGCGACGTATAAAGACGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaatta                                                                                                                                 <  1:128731/141‑4 (MQ=255)
  gcagAATCAGATAAACAAGCACCACAAAGTGACGAATTAACAAACGATTCAAAGGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaatta                                                                                                                                 <  1:491800/141‑4 (MQ=255)
    agAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaattatc                                                                                                                               >  1:720161/1‑136 (MQ=255)
    agAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAaaaaaattatc                                                                                                                               >  2:506130/1‑136 (MQ=255)
          aGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGaaaaa                                                                                                                       >  1:326947/1‑141 (MQ=255)
                aCAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGCGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTgaa                                                                                                                >  1:319968/1‑141 (MQ=255)
                 cAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTgaag                                                                                                               <  1:704739/141‑1 (MQ=255)
                 cAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTgaag                                                                                                               <  1:51484/141‑1 (MQ=255)
                 cAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACCTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTgaag                                                                                                               >  1:613118/1‑141 (MQ=255)
                 cAAGAAGCATAAAGTGACGATATAACAAAAAATACAAATGAAAATGAAATCGAGCAATCAGTAAAAGAACCTGCGACTTACAAAGACGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAAAAAAAAAAAAAACTgaag                                                                                                               <  2:632848/141‑1 (MQ=255)
                  aaGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTgaaga                                                                                                              <  2:504721/141‑1 (MQ=255)
                  aaGCACCACAAAGTGACGATTAAAAAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAAATATAGAAAAAACTgaaga                                                                                                              <  2:10007/141‑1 (MQ=255)
                    gCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTgaagaaa                                                                                                            >  2:349835/1‑140 (MQ=255)
                     caccacAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAGAAATTATCGAAAAAACTGAAGAACa                                                                                                           >  2:604766/1‑141 (MQ=255)
                     caccacAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCACTAAAAGCACCTGCGACGTAGAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACa                                                                                                           >  1:180670/1‑141 (MQ=255)
                         acaAAGTGACGATTTAACAAACTATTCAAATGAAGATAAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCt                                                                                                       <  1:176841/141‑1 (MQ=255)
                         acaAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTTCAGAAAAAACTGAAGGACAATCt                                                                                                       >  1:18077/1‑141 (MQ=255)
                            aagcaacaaTTTAACAAACGATTCAAATTAAGATGAAATAGAGCAATCAGTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCa                                                                                                    <  2:86924/133‑1 (MQ=255)
                            aaGTGACGATTAAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCa                                                                                                    <  2:159905/141‑1 (MQ=255)
                             attGACGAGCTAACAAACGGTGCAGATGAAAATGAAATTGAGCAATGATTAAAAGAACCTGCGACTTATAAAGAATACAGACTTTCACCAGTTTTAATTGATGCAAAAAAATGATCGAAAAAACTGAAGAACAATCTTCAg                                                                                                   <  2:25743/139‑1 (MQ=255)
                             aGTGACGAATTAACAAAAGATTAAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGAAAAAAAAAAAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAg                                                                                                   <  2:462890/141‑1 (MQ=255)
                              gTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGa                                                                                                  <  1:489446/141‑1 (MQ=255)
                               tGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGAt                                                                                                 <  1:346334/141‑1 (MQ=255)
                                caCGATTAAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATa                                                                                                <  1:890175/140‑1 (MQ=255)
                                  cGATTTAACAAACGATTGAAGTGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATaaa                                                                                              <  2:825574/141‑1 (MQ=255)
                                       tAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTAAGATAAAAACaa                                                                                         >  2:437739/1‑141 (MQ=255)
                                            aaCGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAaataat                                                                                    >  2:708698/1‑141 (MQ=255)
                                               gATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACATATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAAc                                                                                 <  2:897316/141‑1 (MQ=255)
                                                aTTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACa                                                                                <  1:332517/141‑1 (MQ=255)
                                                 ttCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACaa                                                                               <  1:501733/141‑1 (MQ=255)
                                                    aaaaGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAgc                                                                            <  1:723532/141‑1 (MQ=255)
                                                    aaaTGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATAAGTTGTTATTGATGCAAAACATCTTCGAAAAATACTGAAGACAAATCTTGCGGGTAAAACAAATAATAAAAAAgc                                                                            >  1:658115/1‑141 (MQ=255)
                                                     aaTGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTAGAAAGAATACAGACGTTCATCATTTGTAATTGATGCAAAAAAATTATCGAAAAAACGGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAgcg                                                                           <  2:444748/141‑1 (MQ=255)
                                                          aGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGc                                                                      <  2:13796/141‑1 (MQ=255)
                                                            aTGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTa                                                                    <  1:421932/141‑1 (MQ=255)
                                                             tGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAg                                                                   >  1:279364/1‑141 (MQ=255)
                                                              gAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGt                                                                  >  1:525681/1‑141 (MQ=255)
                                                                aaTAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGCTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACCATCTCCAGATAAGAACAAATAATAACAAAGCGCTAGCTAGCAc                                                                >  1:111734/1‑141 (MQ=255)
                                                                 aTAGAGCAATCATTCAAAGCACCTGTGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTAcc                                                               >  1:499868/1‑141 (MQ=255)
                                                                 aTAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTAcc                                                               >  1:423226/1‑141 (MQ=255)
                                                                   agagCAAACATTAAAAGAACCTACGAGTTATACAGAAGACAGACGTTCATGAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAGCAAAGCGCTTGCTAGTACctc                                                             <  2:865797/141‑1 (MQ=255)
                                                                    agggaaacATTAAAAAAACATACGACTTATAAAGAAGACAGACGTTCATTAGTTGTAATTGATGCAAAAAAATAATAGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACctct                                                            <  2:6960/134‑1 (MQ=255)
                                                                     agCAATCATTAAAAGAACCTGCGACTTGTAAACAAAACAGACGTGCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTAAGATAAAAAAAAATAAAAACAAAGCGCTTGCTAGTACCTCtt                                                           >  2:52352/1‑141 (MQ=255)
                                                                     agCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCtt                                                           >  2:782480/1‑141 (MQ=255)
                                                                     agCAATCATTAAAAGAACCGGCGACTTATAAAGAGGACAGACGTTCATTAGTTGTAATTGAGGCGAAGAAATAAGCGAAAAAAGTGAAGAGCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCGAGTACCTCtt                                                           >  1:680993/1‑141 (MQ=255)
                                                                       cAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAGCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaa                                                         >  2:277828/1‑141 (MQ=255)
                                                                        aaacATTAAAAGAACCTGCGACTTATAAAGAAAACAGCCATTAATACATAGTCATTGGTACGATAAAACTATCGAAAAAATCGAAGTACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaa                                                        <  2:191623/138‑1 (MQ=255)
                                                                        aaTCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaa                                                        <  2:302616/141‑1 (MQ=255)
                                                                         aTCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaaa                                                       <  1:166715/141‑1 (MQ=255)
                                                                         aTCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAAGTAATGGAACAAAATTATCGAAAAAACTGAAGAACAATCTGCAGATAAAAACAAATAATAACAAAGCGCTTGATATGACCTCTTaaga                                                       >  1:253965/1‑139 (MQ=255)
                                                                          tCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaaaa                                                      >  1:817113/1‑141 (MQ=255)
                                                                           cATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAg                                                     <  2:14945/141‑1 (MQ=255)
                                                                            aTTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTAGCTAGTACCTCTTAAAAAga                                                    >  2:168243/1‑141 (MQ=255)
                                                                             ttAAGAGAACCTGCGACTTATAAAGAAGACCGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGATTGCTAGTAACTCTTAAAAAgac                                                   >  2:554784/1‑140 (MQ=255)
                                                                             ttAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAGCAAACTTCAGATAAAAACGAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAgat                                                   <  2:818051/141‑1 (MQ=255)
                                                                                   gAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCt                                             <  1:379274/141‑1 (MQ=255)
                                                                                    aaCCTACAACATATAAAGAAGACAGACGTTCATCAGTAGAAAAAAAAAAAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTa                                            <  2:609547/141‑1 (MQ=255)
                                                                                     aCCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGAGGCTGCTAg                                           >  2:859343/1‑141 (MQ=255)
                                                                                      ccTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTGGc                                          >  2:749491/1‑141 (MQ=255)
                                                                                      ccTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGc                                          >  2:742796/1‑141 (MQ=255)
                                                                                        tGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGcca                                        >  1:398279/1‑139 (MQ=255)
                                                                                        tGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCaa                                        <  2:644744/141‑1 (MQ=255)
                                                                                         gCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAg                                       <  2:768309/141‑1 (MQ=255)
                                                                                          cGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgc                                      >  1:712516/1‑141 (MQ=255)
                                                                                          cGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgc                                      >  1:648315/1‑141 (MQ=255)
                                                                                          cGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgc                                      <  1:273517/141‑1 (MQ=255)
                                                                                          cGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgc                                      >  1:845056/1‑141 (MQ=255)
                                                                                            aCTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGCTATTAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgcgc                                    <  1:394998/141‑1 (MQ=255)
                                                                                            aCTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgcgc                                    >  2:701018/1‑141 (MQ=255)
                                                                                            aCTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAgcgc                                    >  2:815026/1‑141 (MQ=255)
                                                                                            aCTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTACCAAgcgc                                    >  1:73446/1‑141 (MQ=255)
                                                                                             cTTCTAAAGAAGACAGACGTTCAGCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCt                                   <  1:764243/141‑1 (MQ=255)
                                                                                                ataAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCtttt                                <  1:741196/141‑1 (MQ=255)
                                                                                                ataAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCtttt                                <  1:752178/141‑1 (MQ=255)
                                                                                                ataAAGAAGACAGACGTTCATCAGTTGTAATAGATACAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCGAGCGCtttt                                <  2:221500/141‑1 (MQ=255)
                                                                                                 taAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTc                               >  2:168651/1‑141 (MQ=255)
                                                                                                 taAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTc                               >  1:455535/1‑141 (MQ=255)
                                                                                                 aaaaGAAGACAGACGTTCATCAGTTGTAATTGATGCAAAACAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTc                               <  2:722937/140‑1 (MQ=255)
                                                                                                    agaagaCAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCTAGCGCGTTTctat                            >  1:286962/1‑141 (MQ=255)
                                                                                                     gaagaCAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTAGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctata                           >  2:803081/1‑141 (MQ=255)
                                                                                                      aagaCAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATGTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTATCAGGGGCttttttctat                          >  2:78996/1‑135 (MQ=255)
                                                                                                      aagaCAGACGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTCAAAAGATGATGCTAGCAAGCGCGTTTctatac                          >  2:629861/1‑141 (MQ=255)
                                                                                                           agagGTTCATCACTTGTAATTCATGCAAAAAAATTATCAAAAAAACTTAATAACAATCTTCAGATAAAAACAAATAACAACAAAGCGCTTGCTAGTACCTCTTAAATAGATGATGCTAGCAAGCGCTTTTCTATACtatat                     <  2:387410/141‑1 (MQ=255)
                                                                                                           agacGTTTATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACAGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                     <  1:2522/141‑1 (MQ=255)
                                                                                                           agacGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                     <  2:515001/141‑1 (MQ=255)
                                                                                                           agacGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                     >  2:212396/1‑141 (MQ=255)
                                                                                                            gacGTTCATCAGTTGTGAGTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCGAGCGCTTTTCTATACtatata                    <  2:365630/141‑1 (MQ=255)
                                                                                                            gacGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACTAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatatt                    >  2:653355/1‑140 (MQ=255)
                                                                                                            gacGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTAGCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACcatata                    >  2:467448/1‑141 (MQ=255)
                                                                                                              cGTTCATCAGTTGTAATTGATGCAAAAAAATTGTCGAAAAAACTGACGAACAGTCTTCAGATAAAAACAAATAATAACAAAGCGCTAGCTAGTGCCGGTGAAAAAGCAGATGCTAGCAGCCCCTCTTgtatacaatggatt                  >  2:475553/1‑136 (MQ=255)
                                                                                                              cGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTTTATACTATAtttt                  >  1:417650/1‑141 (MQ=255)
                                                                                                              cGTTCATCAGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTAAAtatt                  >  2:161574/1‑141 (MQ=255)
                                                                                                                 tcatcaGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt               <  2:606687/141‑1 (MQ=255)
                                                                                                                   atcaGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAtttt             <  1:708698/141‑1 (MQ=255)
                                                                                                                     caGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc           <  1:834976/141‑1 (MQ=255)
                                                                                                                      aGTTGTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCCCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTCTATATTATTTTTCt          >  2:516928/1‑141 (MQ=255)
                                                                                                                          gTAATTGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTaaaa      <  2:720161/141‑1 (MQ=255)
                                                                                                                              ttGATGCAAAAAAATTATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtttt  <  1:152395/141‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
CAGCAGAATCAGTTAAACAAGCACCACAAAGTGACGATTTAACAAACGATTCAAATGAAGATGAAATAGAGCAATCATTAAAAGAACCTGCGACTTATAAAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTT  >  CP000730/2455558‑2455825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: