| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP000730 | 68,656 | Δ3 bp | 5.4% | coding (772‑774/852 nt) | USA300HOU_0065 → | transposase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 68659 = | 57 (0.750) | 3 (0.050) | 3/224 | NT | 5.4% | coding (775/852 nt) | USA300HOU_0065 | transposase |
| ? | CP000730 | = 68655 | 57 (0.870) | coding (771/852 nt) | USA300HOU_0065 | transposase | |||||
AATTACCTTTATAAACAAAAGAGCCTATAATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATTATTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/68816‑68659‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attattattattattattGTTTTTAATGTACTTTTCGACAATATCTATTACAATGTGATTAGAGTGATTAAGCTCATTATTGATGTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCC < CP000730/68655‑68523 AATTACCTTTATAAACAAAAGAGCCTATAATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGA > 1:865647/1‑141 TTAACTTTATAAACAAAAGAGCCTATAAGCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATT < 1:405052/141‑1 CAAAAGAGCCTATAATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAACCACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGTTAAGTGGCCTAGGTTTTGTTGACTTCGATTTTTCTTATTATTA > 1:40525/1‑141 CAAAAGAGCCTATAATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGACTTCGATTATTATTATTATTA > 1:282856/1‑141 CAAAAGAGCCTATAATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATTATTA > 1:846538/1‑141 CAAAAGAGCCTATAATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATTATTA > 1:278539/1‑141 aaaatgGCCTATAAGCCCAGGGCACTGAACCCTTAAAACGGGAACTTAATAAACACGCCATGTTCTAGGCTATTATTTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATACGATTATGATTATTATTAT < 2:786672/135‑1 AAAAGAGCGTATAATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTATTTTTTGAATTCGATTATTATTATTATTAT < 2:602254/141‑1 CTAGGGCACTTAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATTATTATTTTTTCTAATGTACTT < 2:618117/141‑1 CATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATTATTATTGTTTTTAATGTACTTTTCGACAATATCTATTACAATGTGATTAGAGTGATTAAGCTC < 1:238835/141‑1 TATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATTATTATTGTTTTTAATGTACTTTTCGACAATATCTATTACAATGTGATTAGAGTGATTAAGCTCATTATTGATGTAAAAAGTTTCAGAC > 2:896026/1‑141 ATTATTATTATTATTATTGTTTTTAATGTACTTTTCGACAATATCTATTACAATGTGATTAGAGTGATTAAGCTCATTATTGATGTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGC > 2:375269/1‑141 TATTATTATTATTGTTTTTAATGTACTTTTCGACAATATCTATTACAATGTGATTAGAGTGATTAAGCTCATTATTGATGTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTG > 1:158120/1‑141 TTATTATTGTTTTTAATGTACTTTTCGACAATATCTATTACAATGTGATTAGAGTGATTAAGCTCATTATTGATGTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCC < 2:452619/141‑1 AATTACCTTTATAAACAAAAGAGCCTATAATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATTATTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/68816‑68659‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attattattattattattGTTTTTAATGTACTTTTCGACAATATCTATTACAATGTGATTAGAGTGATTAAGCTCATTATTGATGTAAAAAGTTTCAGACTTTAGCGAGGAATGGAAACTTTCTATCGGGGCGTTATCGGCAGGTGTTCCC < CP000730/68655‑68523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |