New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 241989790 (1.180)5 (0.070) 4/228 NT 5.5% intergenic (+65/‑172) USA300HOU_2284/ssaA hypothetical membrane protein/secretory antigen SsaA
?CP000730 = 2419903 93 (1.390)intergenic (+71/‑166) USA300HOU_2284/ssaA hypothetical membrane protein/secretory antigen SsaA

Only 100 of 116 total aligned reads displayed.

AATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGA  >  CP000730/2419763‑2420043
                                                                                                                                             |                                                                                                                                             
aaTTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTAc                                                                                                                                               >  2:858927/1‑141 (MQ=255)
 attattGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACa                                                                                                                                              <  1:347091‑M2/141‑2 (MQ=255)
   tagtGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCGGTTAATCTCATTGTAACTTTGACTAATTTTTATTACaaa                                                                                                                                            <  2:372883/138‑1 (MQ=255)
      tGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACaaaatt                                                                                                                                         <  2:71408‑M2/141‑7 (MQ=255)
       gCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATATGTTAATCTCATTGTAACTTTGACTAATATTTATTACaaacata                                                                                                                                        <  1:255210‑M2/141‑8 (MQ=255)
           gtgtCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACaaaattagtca                                                                                                                                    >  1:405812‑M2/1‑130 (MQ=255)
            tgtCAAATAATATAATGGCCAAGAATATATAATACATTTAACAATTCGATTTATTTAAACATACTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACaaaattagtcaa                                                                                                                                   >  1:509890‑M2/1‑129 (MQ=255)
                aaaTATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCACATTGTAACTTTGACTAATTTTTATTACaaaattggtcaaagtt                                                                                                                               >  2:485879‑M2/1‑125 (MQ=255)
                  atagTATAATGGCAAAGAATATATACTACCTTTAACAATTCCATTTATTTAAACATACTACAAATAAATATTTCCTATGAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGtttt                                                                                                                            <  2:53419/141‑1 (MQ=255)
                   aattatAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGttttt                                                                                                                           <  2:619298/140‑1 (MQ=255)
                    attatAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGtttttt                                                                                                                          <  2:274484/141‑1 (MQ=255)
                               cAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTAc                                                                                                               <  1:173585/141‑1 (MQ=255)
                               cAAAAATATATAATACTTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTAc                                                                                                               <  2:591786/141‑1 (MQ=255)
                                aaGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACa                                                                                                              >  1:910052/1‑141 (MQ=255)
                                 aGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTACTTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACaa                                                                                                             >  1:350409/1‑141 (MQ=255)
                                 aGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACaa                                                                                                             >  1:813004/1‑141 (MQ=255)
                                  gAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACaaa                                                                                                            >  2:499812/1‑141 (MQ=255)
                                  aaaTATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACaaa                                                                                                            <  2:500323/140‑1 (MQ=255)
                                   aaTATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTATTCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAAt                                                                                                           >  2:679250/1‑141 (MQ=255)
                                     tatataATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCa                                                                                                         <  1:637486/141‑1 (MQ=255)
                                      atataATACCTTTAACGATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCaa                                                                                                        >  1:539175/1‑141 (MQ=255)
                                        ataataCCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTGTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATa                                                                                                      >  1:70494/1‑141 (MQ=255)
                                        ataataCCTTTAACAATTCGATTTATTTAAACATATCACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTATTTATTCTTTTACAAATCAATa                                                                                                      >  1:631397/1‑141 (MQ=255)
                                         taataCCTTTAACAATTCGATTTATTTAAACATATTACACATCAATATTTCCTATTAATTATCTGTTAATCTCATTGTAAAATATTCTTATTTTGAGTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATaa                                                                                                     <  1:527531/141‑1 (MQ=255)
                                           ataCCTTTAACAATTCGATTTATTTAAACATATTACCAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATAAATAACa                                                                                                   >  2:834746/1‑141 (MQ=255)
                                              ccTTTAACAATTCGATTTATTTAAACATGGTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaa                                                                                                   <  2:736540‑M2/141‑46 (MQ=255)
                                              ccTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTc                                                                                                <  1:645826/141‑1 (MQ=255)
                                                tttAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTccc                                                                                              <  2:753261/141‑1 (MQ=255)
                                                 ttAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTcccc                                                                                             >  1:564841/1‑141 (MQ=255)
                                                    aCAATTCGATTTATTTAAACATATTACAAATAAATCTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAACATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCcaca                                                                                          >  2:14061/1‑141 (MQ=255)
                                                    aCAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTCTTATAAAATGATGCAAATTTTTTTTATTCTTTTACAAATCAATAACATTCCCcaca                                                                                          >  2:413652/1‑141 (MQ=255)
                                                    aCAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCcaca                                                                                          <  2:435321/141‑1 (MQ=255)
                                                    aCAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATATCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAAAAACATTcccaaaa                                                                                          >  2:659392/1‑137 (MQ=255)
                                                       aTTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTATTCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACaaga                                                                                       >  2:596995/1‑141 (MQ=255)
                                                          cGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgt                                                                                       >  2:738320‑M2/1‑84 (MQ=255)
                                                          cGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTTTTCTTTTACTAATCAATAACATTCTCCACAAGAAGc                                                                                    >  2:306791/1‑141 (MQ=255)
                                                             tttatttaAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCAtt                                                                                 <  1:686533/141‑1 (MQ=255)
                                                               taattaAACATATTACAAACAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTaa                                                                               <  1:252062/138‑1 (MQ=255)
                                                                 tttaAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAAtt                                                                             <  2:464775/141‑1 (MQ=255)
                                                                  ttaACCATATCACTAATTATTATTGCCTATTAATTTTCTATTAATCTCATTTTAACTTTTACTTATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACACTCCTCACAAGAAGCATTAAttt                                                                            <  2:473940/141‑1 (MQ=255)
                                                                     aaCATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGt                                                                         >  1:243221/1‑141 (MQ=255)
                                                                      aCATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGtt                                                                        <  1:595815/141‑1 (MQ=255)
                                                                            tACAAATAAATATTTCCTATTCATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTa                                                                  >  1:828698/1‑141 (MQ=255)
                                                                             aCAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTaa                                                                 >  2:229756/1‑141 (MQ=255)
                                                                             aCAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTCTTATTACAGAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTaa                                                                 >  1:808551/1‑141 (MQ=255)
                                                                                   aaataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTTTTTTTTTTCAAATCAATAACATTCCCCACAAGAAGCCTTAATTTTTTTAAATTAACAAttt                                                           >  2:112851/1‑140 (MQ=255)
                                                                                   aaataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTg                                                           <  1:296833/141‑1 (MQ=255)
                                                                                    aataTTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTCGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGt                                                          <  1:615087/141‑1 (MQ=255)
                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  1:106834/141‑1 (MQ=255)
                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  2:97398/141‑1 (MQ=255)
                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  2:563947/141‑1 (MQ=255)
                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  1:733118/141‑1 (MQ=255)
                                                                                      tatTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAAAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        >  1:18722/1‑141 (MQ=255)
                                                                                      tatTTCCTATTAATTACCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  2:394483/141‑1 (MQ=255)
                                                                                      tagttCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCGCAAGAAGCATTAATTTTGTTAAAGTAACTATTGtca                                                        <  2:696432/138‑1 (MQ=255)
                                                                                         ttCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTGTAATAaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaagg                                                        >  1:736540‑M2/1‑53 (MQ=255)
                                                                                          tCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCAACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCaa                                                    >  1:403125/1‑141 (MQ=255)
                                                                                             tATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTTTTTTTTTATAAATCAATAACATTCCCCACAATAAGCATTAATTTTGTTGAAGTAACTATGATCATCAAtac                                                 >  2:366887/1‑139 (MQ=255)
                                                                                             tATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAAtta                                                 >  2:366886/1‑140 (MQ=255)
                                                                                             tATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTc                                                 <  1:691335/141‑1 (MQ=255)
                                                                                              attaattaTCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAATTCAATAACATTCCCCACAAGAGACATTAATTTTGTTAAAGTAACTATTGTCATTAAtttg                                                >  2:266156/1‑139 (MQ=255)
                                                                                                taattaTCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCACCAATTCgg                                               >  1:284562/1‑140 (MQ=255)
                                                                                                        tGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTggga                                      >  1:242530/1‑141 (MQ=255)
                                                                                                        tGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTgaga                                      <  1:871643/141‑1 (MQ=255)
                                                                                                          ttAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTAGAAATGTGAGAAt                                    >  2:450248/1‑141 (MQ=255)
                                                                                                            aaTCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATaa                                  >  1:356863/1‑141 (MQ=255)
                                                                                                              tctcATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATacaa                                >  1:413235/1‑141 (MQ=255)
                                                                                                              tctcATTGTAACTTTGACTAATGTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAAAAGCATTAATTTTGTTAAAGTAACAATAGTCATCAATCCGAGATGTGAGAaaaaaa                                >  1:709210/1‑141 (MQ=255)
                                                                                                               ctcATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATaaaaa                               >  1:896409/1‑140 (MQ=255)
                                                                                                                tcATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACa                              >  2:900616/1‑141 (MQ=255)
                                                                                                                 cATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTGTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAg                             >  2:26702/1‑141 (MQ=255)
                                                                                                                   ttGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTc                           <  1:499812/141‑1 (MQ=255)
                                                                                                                       aaCTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGGTa                       >  1:615125/1‑141 (MQ=255)
                                                                                                                       aaCTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTa                       <  1:813181/141‑1 (MQ=255)
                                                                                                                        aCTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTAc                      >  1:324016/1‑141 (MQ=255)
                                                                                                                        aCTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGACGCTAc                      >  2:623915/1‑141 (MQ=255)
                                                                                                                          tttGACTAATTTTTATTACAACATTAGTCAAAGTTTTTTTATTATTTTACAAAGCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGt                    <  1:119496/141‑1 (MQ=255)
                                                                                                                           ttGACTTATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCTAGATGTGAGAATAAAACAGTCGCTACGtt                   <  2:536887/141‑1 (MQ=255)
                                                                                                                           ttGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGGGATGTGAGAATAAAACAGTCGCTACGtt                   >  2:378998/1‑141 (MQ=255)
                                                                                                                            tGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACCAATCAATAACATTCCCCACAAGAAACATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGttt                  <  1:345638/141‑1 (MQ=255)
                                                                                                                            tGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAATGTAAGTATTGTCATCCATTCGAGATGTGTGATTAGAACTGTcgtttcgttt                  >  1:11970/1‑141 (MQ=255)
                                                                                                                            tGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTAAAAATCAATAACATTCCCCACAATAAGCATTAATTTTGTTAAATAAACTATTGTCATCAATTCGAGATGTGCGAATAAACCAGTCGCTCCGttt                  >  2:363768/1‑141 (MQ=255)
                                                                                                                             gACTAATTTTGTAATAAAAATTAGTCAAACTTTTTTTATTCTTTTAGAAATCAATAACATTCTCCACCAGAAGCATTCATTCTGTTAAAGTAACTCTTGTACGCAATTCGAGATGTGAGAATAAAAAAGTCGCTACGtttt                 >  2:424555/1‑141 (MQ=255)
                                                                                                                             gACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGtttt                 <  2:813004/141‑1 (MQ=255)
                                                                                                                              aCTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTttta                >  1:340282/1‑141 (MQ=255)
                                                                                                                              aCTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTttta                >  1:787433/1‑141 (MQ=255)
                                                                                                                                tAATTTTTATTACaaaattagtcaaagtttcaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgc               >  2:255210‑M2/1‑13 (MQ=255)
                                                                                                                                 aaTTTTTATTACAAAAGTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTtttattt             <  1:441355/141‑1 (MQ=255)
                                                                                                                                   tttttATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTttgtttat           >  1:809645/1‑141 (MQ=255)
                                                                                                                                   tttttATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTttatttat           <  1:41762/141‑1 (MQ=255)
                                                                                                                                    ttttATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTGCAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGGATAAAACAGTCGCTACGTTTTATTtcta          >  1:845182/1‑141 (MQ=255)
                                                                                                                                    ttttATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATGAAACAGTCGCTACGTTTTATTtata          >  1:161058/1‑141 (MQ=255)
                                                                                                                                    ttttATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGATACGTCTTATTtata          >  1:473902/1‑141 (MQ=255)
                                                                                                                                    ttttATTACAAAATTAGTCAAAGTTTTTTTATTCTTTCACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAAGTCGAGATGTGAGAATAAAACAGTCGCTACGTATTATTtata          >  2:491478/1‑141 (MQ=255)
                                                                                                                                     tttATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATaa         <  2:910052/141‑1 (MQ=255)
                                                                                                                                          ttaCaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgcaataattgt      >  1:738320‑M2/1‑4 (MQ=255)
                                                                                                                                          ttaCaaaattagtcaaagttacaatgagattaacagataattaataggaaatatttatttgtaatatgtttaaataaatcgaattgttaaaggtattatatattcttggccattataatatttgacacacgcaataattgt      >  1:797980‑M2/1‑4 (MQ=255)
                                                                                                                                             cAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGa  >  1:194673/1‑141 (MQ=255)
                                                                                                                                             cAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGa  >  2:763789/1‑141 (MQ=255)
                                                                                                                                             cAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGa  >  1:491733/1‑141 (MQ=255)
                                                                                                                                             |                                                                                                                                             
AATTATTGCGTGTGTCAAATATTATAATGGCCAAGAATATATAATACCTTTAACAATTCGATTTATTTAAACATATTACAAATAAATATTTCCTATTAATTATCTGTTAATCTCATTGTAACTTTGACTAATTTTTATTACAAAATTAGTCAAAGTTTTTTTATTCTTTTACAAATCAATAACATTCCCCACAAGAAGCATTAATTTTGTTAAAGTAACTATTGTCATCAATTCGAGATGTGAGAATAAAACAGTCGCTACGTTTTATTTATAAAAAAAGA  >  CP000730/2419763‑2420043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.