Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 677,733 A→G 5.9% I213V (ATT→GTT)  USA300HOU_0620 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730677,7330AG 5.9% 253.2 / 3.4 99I213V (ATT→GTT) USA300HOU_0620hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (41/51);  new base G (3/3);  total (44/55)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.70e-01

Only 100 of 101 total aligned reads displayed.

GCGTTATACCAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAACTATTCACTTGAT  >  CP000730/677593‑677864
                                                                                                                                             |                                                                                                                                     
gCGTTATTCCAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGa                                                                                                                                       <  1:129318/141‑1 (MQ=255)
gCGTTATACCAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGa                                                                                                                                       <  2:433188/141‑1 (MQ=255)
  gTTATACCAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGAtt                                                                                                                                     >  1:748395/1‑141 (MQ=255)
   ttATACCAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTc                                                                                                                                    >  2:708502/1‑141 (MQ=255)
    tataCCAATTACAAATTTTGGACATCAATTTTTCTTTTGCATTGGTATTATTTTAGTAATTGCCGACATATTTTATAAGCGACTTGAGATTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCa                                                                                                                                   >  2:396773/1‑141 (MQ=255)
     ttaCCAATTAAAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTACTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGCTTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCAt                                                                                                                                  <  1:526879/140‑1 (MQ=255)
     ataCCAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCAt                                                                                                                                  <  1:157149/141‑1 (MQ=255)
        ccAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCCTATGTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTGTTTTGTCAAAACACCGTCGATGCCATGGTTCATAAt                                                                                                                               >  1:63359/1‑141 (MQ=255)
        ccAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGGTTCATAAt                                                                                                                               >  1:8839/1‑141 (MQ=255)
        ccAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGGTTCATAAt                                                                                                                               >  1:850078/1‑141 (MQ=255)
         caattgtttaTTTTGGACATCAATGTTTCTCTTTCATTGGTATTATTTTAGTAATGGCCGGCATATTTTATAAGCGACTTGAGTTTCCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATc                                                                                                                              <  1:295115/132‑1 (MQ=255)
          aaTTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAACAACTGCCGATGCAATGATTCATAATcc                                                                                                                             <  1:670973/141‑1 (MQ=255)
          aaTTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATTCAATGATTCATAATcc                                                                                                                             <  1:671547/141‑1 (MQ=255)
              aCAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACaa                                                                                                                         >  1:376599/1‑141 (MQ=255)
                aaaTTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATc                                                                                                                       >  1:723981/1‑141 (MQ=255)
                aaaTTTTGGAAACCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATc                                                                                                                       >  2:886055/1‑141 (MQ=255)
                 aaTTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCa                                                                                                                      >  1:527881/1‑141 (MQ=255)
                    tttGGACATCAATTTTTCTTTTTCATTGGTCTTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATACTCCACAATCAGcc                                                                                                                   >  1:78722/1‑141 (MQ=255)
                    tttGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGcc                                                                                                                   >  1:775157/1‑141 (MQ=255)
                     ttGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGccc                                                                                                                  <  1:325632/141‑1 (MQ=255)
                     ttGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGccc                                                                                                                  <  2:748395/141‑1 (MQ=255)
                      tGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCa                                                                                                                 <  1:843901/141‑1 (MQ=255)
                        gACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGa                                                                                                               >  2:705211/1‑141 (MQ=255)
                        gACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGa                                                                                                               <  1:241373/141‑1 (MQ=255)
                        gACATCAATTCTTCTTTGTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGa                                                                                                               <  1:24129/141‑1 (MQ=255)
                         aCATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTTTTTTGTCAAAAAACAGTCGATGCAATGATTCATAATCCACAATCAGCCCAGAt                                                                                                              >  2:278918/1‑141 (MQ=255)
                         aCATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGAt                                                                                                              <  2:314018/141‑1 (MQ=255)
                         aCATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGAt                                                                                                              >  1:536214/1‑141 (MQ=255)
                         aCATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGAt                                                                                                              >  1:722400/1‑141 (MQ=255)
                         aCATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATAAGCCCAGAt                                                                                                              >  2:190293/1‑141 (MQ=255)
                         aCATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCATCGATGCAATGATTCATAATCCACAATCAGCCCAGAt                                                                                                              >  1:802555/1‑141 (MQ=255)
                             cAAGTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGAttttt                                                                                                          <  1:379392/141‑1 (MQ=255)
                                tttttctttttcATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGCtttttttt                                                                                                       >  2:19657/1‑139 (MQ=255)
                                tttttctttttcATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCa                                                                                                       <  1:42702/141‑1 (MQ=255)
                                tttttctttttcATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCa                                                                                                       >  1:788382/1‑141 (MQ=255)
                                tttttctttttcATTGGTATTATTTTAGTAAGTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGTGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCa                                                                                                       <  2:781268/141‑1 (MQ=255)
                                tttttctttgtcATTGGTATTATTTTAGTAATCGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCa                                                                                                       <  1:195459/141‑1 (MQ=255)
                                tttttctatatcAATGGTATTAATTCACTAATTGCCGACATATTTTACAAGCGACTTGAGTTTTCGGGAATCGGGTTATAAAAAAAAAAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCa                                                                                                       <  2:709551/141‑1 (MQ=255)
                                    tttttttcATTACTGTTGTTTTCTTAATTGCAGGCATTCTTAATAAGCCATTCACTTCTTCGGGAACCGTGTTCTTATTTCGTCAAAAAACCTTCGATGCAATGATTCATAATCCACAATCCTCCCAGATTTTTTCattaa                                                                                                   <  2:441488/139‑1 (MQ=255)
                                    tctttttcATTGGTATTATTTTAGTAATTGCCGGTATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCattaa                                                                                                   <  1:537031/141‑1 (MQ=255)
                                     ctttttcATTGGTATTATTTTAGTAATTGCCGGCATATTTTATACGCGTCTGGTGTTGTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCattaat                                                                                                  <  1:252710/141‑1 (MQ=255)
                                      tttctcATGGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCattaatt                                                                                                 <  1:32965/141‑1 (MQ=255)
                                       ttttcATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCattaatta                                                                                                <  2:723981/141‑1 (MQ=255)
                                             ttGGCATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAATCCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGa                                                                                          <  1:64352/141‑1 (MQ=255)
                                               ggTATTATTTTAGAAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGata                                                                                        <  2:86355/141‑1 (MQ=255)
                                               ggTATAATTTTCGTAATGGCCGGCATATTTTATAAGCGACTTGAGGTTTCGGGATTCGGGTTAATAATTTGAAAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGata                                                                                        <  2:12400/141‑1 (MQ=255)
                                                     tttttACTAATTGACGCCATATTTTATAAGCGACTTGAGTTTTCGGGACTCGTGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATAttatta                                                                                 <  2:835700/140‑1 (MQ=255)
                                                     attTTAGGAATGGCCGTCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATAttatta                                                                                 <  2:239852/141‑1 (MQ=255)
                                                        ttAGTAATTGCAGGCATATTTTTTAAGCGTATTGAGTTTTCGGCAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGAAATATTCAGGAATTATATGGATATTATtagta                                                                              <  2:417482/141‑1 (MQ=255)
                                                         tAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATCTTATtagtag                                                                             >  2:797332/1‑141 (MQ=255)
                                                         tAGGAATTGGCGCAATATGTTATAGGCGACTTGAGTTTTCGGGAATCGGGTCATTATTTTGTCGAAAAACCGTCGATGCAACGATTCATAGTCGACAACCGGCCCAGATTTTTTCCTTTATTATATGGATATTATtagtgg                                                                             >  2:309316/1‑139 (MQ=255)
                                                          aGTATTTCCCGGCATATTTTATAAGCGACCTCAGTTTTCGGGAATCGAGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCATATTTTTTCATTACTTATATGGATATTATTagtagt                                                                           <  1:248180/141‑1 (MQ=255)
                                                          aGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTagtagt                                                                           >  2:121167/1‑141 (MQ=255)
                                                          aGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGACTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTagtagt                                                                           <  1:312143/141‑1 (MQ=255)
                                                                 gCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGtt                                                                    >  1:14612/1‑141 (MQ=255)
                                                                  ccGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTta                                                                   <  1:885813/141‑1 (MQ=255)
                                                                  ccGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTta                                                                   <  1:221713/141‑1 (MQ=255)
                                                                  ccGCCATATTTTATAAGGGACTTAAGTTTTCTGGAATCGGGTTATAAAAAAAAAAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTta                                                                   <  2:732648/141‑1 (MQ=255)
                                                                    ggCATATTTTATACGCGACTTGAGTTTTCGGGAACCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTtata                                                                 <  1:3898/141‑1 (MQ=255)
                                                                    ggCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGCTTTTTTCATTAATTCTATGGCTCTTCCTCGTAGTTCTAGttctt                                                                 >  2:606238/1‑138 (MQ=255)
                                                                    ggCATATTTTATAAGCGACTCGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTtata                                                                 >  1:640582/1‑141 (MQ=255)
                                                                     gCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTTATTATATGGATATTATTAGTAGTTCTAGTtatat                                                                <  1:309316/141‑1 (MQ=255)
                                                                         atTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATAttt                                                            <  1:64233/141‑1 (MQ=255)
                                                                         atTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATAttt                                                            <  2:479092/141‑1 (MQ=255)
                                                                          ttttATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTc                                                           >  1:28412/1‑141 (MQ=255)
                                                                            ttATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCCTCGATGCAATGATTCATAATCCACAATCAGCACAGATTTTTTCATTAATTATATGGATGTTATTAGGAGTTATGGTTAAATATTTcac                                                         >  1:410468/1‑141 (MQ=255)
                                                                            ttATAAGCGACTTGAGTTTTCGGGAAACGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTcac                                                         <  2:753698/141‑1 (MQ=255)
                                                                                   ggACTGGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGa                                                  <  1:729645/140‑1 (MQ=255)
                                                                                   cGACTTGAGTTTTCGGGAATGGGGTTATTATTTTGTCAAAAAACAGTCGATGCAATGACTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATGATTAGTAGTTCTAGTTATGTATTTCACAATTAGa                                                  >  1:551764/1‑141 (MQ=255)
                                                                                   cGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACGGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGa                                                  >  1:497181/1‑141 (MQ=255)
                                                                                   cGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGa                                                  <  1:326409/141‑1 (MQ=255)
                                                                                    gACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGAt                                                 <  1:356943/141‑1 (MQ=255)
                                                                                    gACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGAt                                                 >  1:814014/1‑141 (MQ=255)
                                                                                        tGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAACACCGTCGATGCAATGATTCATAAGCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTGGTTCTAGTTATATATTTCACAATTACATTAtt                                             >  1:396326/1‑140 (MQ=255)
                                                                                            ttttCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCa                                         >  2:802437/1‑141 (MQ=255)
                                                                                             tttCGGGAATCGGGTTATTATTTTTTCAAAAAACCGTCGATGCAATGATTCTTAACCCAACATCATCCCAGTTTTTTTCATTAATTATATGGATTTTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCAc                                        <  2:214089/141‑1 (MQ=255)
                                                                                             tttCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCAc                                        <  2:634571/141‑1 (MQ=255)
                                                                                             tttCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCAc                                        <  2:28412/141‑1 (MQ=255)
                                                                                               ttcggtaacgtggTTATTATTTTGTCAAAAAACCGTCNATGCAATGGTTGATCATCCACAATCAGCCCAGATCTTTTCATTAATTATATGGCTATTATTAGTAGTTCTAGTTCTATATTTCACAATTAGATTATCTTCACg                                       <  2:63359/130‑1 (MQ=255)
                                                                                               ttCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGGTTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACg                                       <  2:850078/141‑1 (MQ=255)
                                                                                               ttCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGGTTCATAATACACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCttgtac                                       <  2:8839/141‑5 (MQ=255)
                                                                                               ttCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATCTGGATCTTCTTAGTAGATCGATTTATATATTTCACAATTAGATTATCTTCACg                                       >  2:411322/1‑141 (MQ=255)
                                                                                                  gggAAACGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAGTTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTAc                                    <  2:518763/141‑1 (MQ=255)
                                                                                                   ggAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAACCCAGATTTTTTCATTAATTAAATGGATTTCTGTTATAGATCTCGTTATATATTTCACAATTAGATTATCTTCACTTACa                                   >  1:206864/1‑141 (MQ=255)
                                                                                                              attattTTTTTAAAAAACCGCCGATGCAATTTATCATTATGTACAAGCATTGCAGATTGTTTCATTAAGTATATGGATATGATTAGTAGTTTTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAat                        <  2:26087/141‑1 (MQ=255)
                                                                                                              attattTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAat                        <  1:183317/141‑1 (MQ=255)
                                                                                                              attattTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCAAGCACCTTGCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAat                        <  1:662221/141‑1 (MQ=255)
                                                                                                              attattTTGTCAAAAAACCGTCGATGAAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAat                        <  2:410548/141‑1 (MQ=255)
                                                                                                                     tGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATaa                 >  1:53479/1‑141 (MQ=255)
                                                                                                                      gTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATaaa                <  1:768574/141‑1 (MQ=255)
                                                                                                                      aaaaaaaaaCCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATaaa                <  2:688545/138‑1 (MQ=255)
                                                                                                                         aaaaaaCCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTCGCTACTTGAATAGATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAACt             >  1:209951/1‑141 (MQ=255)
                                                                                                                         aaaaaaCCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAACt             >  1:8195/1‑141 (MQ=255)
                                                                                                                             aaCCGTCGATGCAATGATTCATAATCACCAATCCGCCCAGATTTTTTCATTAATTATATGGATCTTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATATATCTGATAAAACTATTc         >  2:736241/1‑141 (MQ=255)
                                                                                                                              aCCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAACTATTCa        >  1:564929/1‑141 (MQ=255)
                                                                                                                               ccGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAACTATTCAc       >  2:694021/1‑141 (MQ=255)
                                                                                                                                 gTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAACTATTCACtt     >  1:718828/1‑141 (MQ=255)
                                                                                                                                 ctCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAACTATTCACtt     <  1:239840/140‑1 (MQ=255)
                                                                                                                                    gATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGCTAAAACTATTCACTTGAt  >  1:183624/1‑141 (MQ=255)
                                                                                                                                    gATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAattattactttgat  >  2:511789/1‑133 (MQ=255)
                                                                                                                                             |                                                                                                                                     
GCGTTATACCAATTACAAATTTTGGACATCAATTTTTCTTTTTCATTGGTATTATTTTAGTAATTGCCGGCATATTTTATAAGCGACTTGAGTTTTCGGGAATCGGGTTATTATTTTGTCAAAAAACCGTCGATGCAATGATTCATAATCCACAATCAGCCCAGATTTTTTCATTAATTATATGGATATTATTAGTAGTTCTAGTTATATATTTCACAATTAGATTATCTTCACGTACAAGATTATAAATATGATAAAACTATTCACTTGAT  >  CP000730/677593‑677864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: