Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,343,438 C→T 32.9% intergenic (+114/+250) USA300HOU_2200 → / ← alsD hypothetical protein/acetolactate decarboxylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,343,4380CT32.9% 91.7 / 55.7 79intergenic (+114/+250)USA300HOU_2200/alsDhypothetical protein/acetolactate decarboxylase
Reads supporting (aligned to +/- strand):  ref base C (24/27);  new base T (12/13);  total (36/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01

AAACAGATACAAATTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGTAATTAT  >  CP000730/2343298‑2343576
                                                                                                                                            |                                                                                                                                           
aaaCAGATACAAATTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATAc                                                                                                                                             <  1:521604/141‑1 (MQ=255)
aaaCAGATACAAATTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATAc                                                                                                                                             <  2:521850/141‑1 (MQ=255)
     gATACAAATTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAg                                                                                                                                        <  1:399784/141‑1 (MQ=255)
      aTACGAATTGTAGTTAAATACTAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGt                                                                                                                                       <  1:657079/141‑1 (MQ=255)
      aTACAAATTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGt                                                                                                                                       <  1:41926/141‑1 (MQ=255)
       tACAAATTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTTTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTa                                                                                                                                      >  2:321969/1‑141 (MQ=255)
       tACAAATTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAAGAGTa                                                                                                                                      <  2:629973/141‑1 (MQ=255)
            aTTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGACAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAAttt                                                                                                                                 >  1:862123/1‑141 (MQ=255)
                tAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTATTAACAGATTGGCCTTTACAATATTTAATTTtatt                                                                                                                             >  1:152393/1‑140 (MQ=255)
                 aGTTCAATAAAAATTTGAAAATAGTTTTATAGGTCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTatat                                                                                                                            <  1:112875/141‑1 (MQ=255)
                 aGTTAAATAATTATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTatat                                                                                                                            <  1:543671/141‑1 (MQ=255)
                  gTTAAATAATAATTTGAACATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATg                                                                                                                           >  2:776178/1‑141 (MQ=255)
                         aataatTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGCATTTTTACTTTTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAgtgtgt                                                                                                                    <  1:432663/141‑1 (MQ=255)
                          ataatTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTa                                                                                                                   <  1:461698/141‑1 (MQ=255)
                          ataatTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTa                                                                                                                   <  1:776427/141‑1 (MQ=255)
                          ataatTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAAATTTATATTATTATGTa                                                                                                                   <  2:886322/141‑1 (MQ=255)
                             atTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATCGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACca                                                                                                                <  2:748131/141‑1 (MQ=255)
                              tttGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACcac                                                                                                               <  1:714155/141‑1 (MQ=255)
                                   aaaTAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTAGCACAAttt                                                                                                          >  2:692284/1‑141 (MQ=255)
                                   aaaTAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTGTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAAttt                                                                                                          <  2:129623/141‑1 (MQ=255)
                                    aaTAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTta                                                                                                         >  2:397843/1‑141 (MQ=255)
                                    aaTAGTTTTAGAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTta                                                                                                         <  1:77104/141‑1 (MQ=255)
                                    aaTAGTTTTAGAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTta                                                                                                         <  2:576567/141‑1 (MQ=255)
                                     aTAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAGTTTGATATGAGTGTGTACCACAATTtat                                                                                                        <  1:577239/141‑1 (MQ=255)
                                     aTAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTtat                                                                                                        <  1:624354/141‑1 (MQ=255)
                                           ttATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTa                                                                                                  <  2:489295/141‑1 (MQ=255)
                                            tataGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTTTAATCTaa                                                                                                 >  2:787635/1‑141 (MQ=255)
                                            tataGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTaa                                                                                                 >  2:386923/1‑141 (MQ=255)
                                             ataGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTaaa                                                                                                <  1:806222/141‑1 (MQ=255)
                                             ataGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTaaa                                                                                                <  2:434576/141‑1 (MQ=255)
                                                 ggCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATa                                                                                            >  1:422571/1‑141 (MQ=255)
                                                  gCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATaa                                                                                           >  2:584038/1‑141 (MQ=255)
                                                       cgcTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATCGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCa                                                                                      >  2:299327/1‑141 (MQ=255)
                                                         cTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTCGTAACAGAGTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCaaa                                                                                    >  2:548163/1‑141 (MQ=255)
                                                         cTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCaaa                                                                                    >  2:580738/1‑141 (MQ=255)
                                                         cTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGAGTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCaaa                                                                                    >  2:907722/1‑141 (MQ=255)
                                                         cTGAAAAATTGGCGATTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAAGCGATTAGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAAAAGCaaa                                                                                    >  2:548015/1‑141 (MQ=255)
                                                                aTTTGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCGTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCaac                                                                             <  2:804224/141‑2 (MQ=255)
                                                                aTTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCaaa                                                                             >  2:32544/1‑141 (MQ=255)
                                                                   ggCGTTTCTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAatat                                                                          <  2:743613/141‑1 (MQ=255)
                                                                      gTTAGTCTTTTTAATTATTGAACTTGTAAATTATGGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAGAATTTCGATGAGTGTCTACCACACTTTATAATCTAAACATAAAAGaaagactgcaacatcag                                                                       >  2:166406/1‑127 (MQ=255)
                                                                                ttAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCtaata                                                            <  1:862274/141‑1 (MQ=255)
                                                                                 tAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCtaataa                                                           <  2:734637/141‑1 (MQ=255)
                                                                                 tAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCtaataa                                                           <  1:820524/141‑1 (MQ=255)
                                                                                     tATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGCGTGTGTACCACAATTTATAATCTAAACATAACACCCAACCTCCAATATCTGGAACCTAATAAATcc                                                       >  2:145255/1‑141 (MQ=255)
                                                                                     tATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATcc                                                       >  2:145280/1‑141 (MQ=255)
                                                                                      ttttttcTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTATCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATccc                                                      >  2:255808/7‑141 (MQ=255)
                                                                                      aTTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAATTATCTGGAACCTAATAAATacc                                                      >  1:83411/1‑141 (MQ=255)
                                                                                       ttGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATcccc                                                     <  1:635302/141‑1 (MQ=255)
                                                                                            cTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCact                                                >  1:745452/1‑141 (MQ=255)
                                                                                               gTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATGACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCactacc                                             >  2:433658/1‑140 (MQ=255)
                                                                                                tAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTg                                            >  2:89211/1‑141 (MQ=255)
                                                                                                  agttattGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAAGAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCt                                          <  2:399021/139‑1 (MQ=255)
                                                                                                  aaTTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCt                                          <  1:776178/141‑1 (MQ=255)
                                                                                                  aaTTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATACCTGGAACCTAATAAATCCCCTCACTACTGCt                                          >  2:282886/1‑141 (MQ=255)
                                                                                                     tattGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAAt                                       >  1:244683/1‑141 (MQ=255)
                                                                                                      attGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATa                                      >  2:268370/1‑141 (MQ=255)
                                                                                                       ttgttgTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAg                                     <  1:397843/141‑1 (MQ=255)
                                                                                                              ttGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAggg                              <  2:201302/141‑1 (MQ=255)
                                                                                                                 cTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGTGatt                           <  1:618138/141‑1 (MQ=255)
                                                                                                                 cTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGatt                           >  2:161921/1‑141 (MQ=255)
                                                                                                                   tctcGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGcttta                         >  1:8521/1‑141 (MQ=255)
                                                                                                                      cGTAGTAACAGATTGGCCTATATAATAGTCAATTTTAGATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATGAATCCCCTCACTACTACTAATAGTGAAGGGatttattt                      >  2:680203/1‑141 (MQ=255)
                                                                                                                      cGTAGTAACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACACTTTATACTCTAGACATAACAGCAACTCTAAAATATCTAGTACCTAGTACATCCCCTCACTACTGCTAATTGTGCAGGAatgtatgt                      >  2:25884/1‑139 (MQ=255)
                                                                                                                        gagtaACAGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGAtttatttta                    <  1:797628/140‑1 (MQ=255)
                                                                                                                         agtaACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGAtttattttat                   <  2:220028/141‑1 (MQ=255)
                                                                                                                              cAGAGTGGCCGATAGAATAGTAAATTTTATATGAGTGTGGGACACAAGTTATAAGCTAAACATAACAGCACATCTCGAATTATGCGACACTAATAGAGCCCCCAGGTGCGGCTAATAGTGAAGCGATTTATTTTATTACtt              <  2:878245/141‑1 (MQ=255)
                                                                                                                               aGATTGGCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTa             <  1:708801/141‑1 (MQ=255)
                                                                                                                                gATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAg            >  1:837697/1‑141 (MQ=255)
                                                                                                                                 aTTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGa           <  1:419142/141‑1 (MQ=255)
                                                                                                                                  ttGGCCTATAAAATAGTCAATTTTATATGCGTGTGCACCACTATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGAc          <  2:862123/141‑1 (MQ=255)
                                                                                                                                    ggCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCCCTACTGCTAATAGTGAAGGGATTTATTTTTTTTCTTAGACGt        <  2:530717/141‑1 (MQ=255)
                                                                                                                                    ggCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGt        <  1:321969/141‑1 (MQ=255)
                                                                                                                                    ggCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGt        <  2:35390/141‑1 (MQ=255)
                                                                                                                                    ggCCTATATAATAGTAAATTTTATATGAGTGTGTACCACAACTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTCATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGt        <  1:696265/141‑1 (MQ=255)
                                                                                                                                    ggCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGt        >  1:589417/1‑141 (MQ=255)
                                                                                                                                      ccTAAAAAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGTaa      <  2:6510/141‑1 (MQ=255)
                                                                                                                                       cTATATAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGTAAt     >  1:684129/1‑141 (MQ=255)
                                                                                                                                        tataCAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGTAAtt    <  1:645909/141‑1 (MQ=255)
                                                                                                                                          taCAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGTAATtat  >  2:370614/1‑141 (MQ=255)
                                                                                                                                          taCAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATCACTTAGACGTAATtat  >  2:545728/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                           
AAACAGATACAAATTGTAGTTAAATAATAATTTGAAAATAGTTTTATAGGGCAAGCGCTGAAAAATTGGCGTTTGTCTTTTTAGTTATTGAACTTGTAAATTATTGTTGTTTGCTTCTCGTAGTAACAGATTGGCCTATACAATAGTAAATTTTATATGAGTGTGTACCACAATTTATAATCTAAACATAACAGCAAATCTCAAATATCTGGAACCTAATAAATCCCCTCACTACTGCTAATAGTGAAGGGATTTATTTTATTACTTAGACGTAATTAT  >  CP000730/2343298‑2343576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: