Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073035,9700TC61.6% 1069.0 / inf 1404E194E (GAA→GAGtpnIS431mec transposase
Reads supporting (aligned to +/- strand):  ref base T (275/260);  new base C (399/460);  total (678/726)
Fisher's exact test for biased strand distribution p-value = 7.78e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 1412 total aligned reads displayed.

AAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTA  >  CP000730/35836‑36118
                                                                                                                                      |                                                                                                                                                    
aataaTTTAGCTATCCACGAATATATCATGTCAGTGTTCGTTTTACTTGCTAGCATGATGCTACTTTCGTGGCATGGGTAAAATCCGGAGATCTGAAGAGACCTACGGTTTTTTTTATATAGAGCGTAAATACATTCAATa                                                                                                                                                <  1:713062/138‑1 (MQ=1)
            aatcACTAATATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTa                                                                                                                                    <  1:948197/138‑1 (MQ=0)
                       tATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATAc                                                                                                                 >  2:87110/1‑149 (MQ=2)
                        aTCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACt                                                                                                                >  2:157578/1‑149 (MQ=11)
                              tCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATa                                                                                                          >  2:61408/1‑149 (MQ=32)
                                ggtgtTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACt                                                                                                                >  1:1036606/2‑141 (MQ=14)
                                 gtgtGCGCATAACTTGCTCGCATGATGGTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACtt                                                                                                               <  1:934009/141‑1 (MQ=11)
                                  tgtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCtt                                                                                                      <  2:576353/149‑1 (MQ=17)
                                  ggtTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCtt                                                                                                      <  2:19472/148‑1 (MQ=17)
                                    ttCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGt                                                                                                    >  2:366862/1‑149 (MQ=12)
                                    ttCGCTTAACTTGCTAGCATGAGGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGGGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGa                                                                                                            <  1:81215/141‑1 (MQ=12)
                                     tCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtc                                                                                                   >  2:48703/1‑149 (MQ=17)
                                      cgtttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtct                                                                                                  <  2:899952/146‑1 (MQ=17)
                                      cgtttAACTTGCTAGCATGATGCTAATTTCGTGACATGGGGAAAATCCCTGGAAATGAAGCGACATCACGACATTCTAATACACTGTGTATATACATGTAACACCTTTTAAAGTATTCTTTTCCGTATTGATACTTTGATa                                                                                                          >  1:873793/4‑141 (MQ=2)
                                      cGCTTAACTTGCTAGCATTATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGGTACTTTGATa                                                                                                          <  1:681179/141‑1 (MQ=12)
                                      cGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGGAGAGAGCTGCGGTTCTTTTTATATAGAGCGTAAATACACTAAATACGTTTTAAATTATTCTTTGATCTATTGATTCTTTgttt                                                                                                          >  1:153402/1‑138 (MQ=11)
                                       gCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtctt                                                                                                 <  2:818572/149‑1 (MQ=17)
                                         ttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCTGTAGATCTGAAGTGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTATAGTATTCTTTGCTGTTTTGTTTCTTTGATATCTTGtctttt                                                                                               >  2:539073/1‑148 (MQ=11)
                                         ttAACGTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCt                                                                                                       <  1:559848/141‑1 (MQ=17)
                                            aCTTGCTAGCATGATGCTAATTTCGTGACATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTGTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATAGAGACGTTGATATCTTGtcttttcta                                                                                            >  2:559284/1‑145 (MQ=11)
                                              ttGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtct                                                                                                  <  1:694573/141‑1 (MQ=255)
                                               tGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGCCCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACtt                                                                                         >  2:50248/1‑149 (MQ=25)
                                               tGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACtt                                                                                         <  2:404031/149‑1 (MQ=25)
                                                gCTAGCATGCTGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGtcttt                                                                                                <  1:286615/141‑1 (MQ=11)
                                                gCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACATTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtcttt                                                                                                >  1:1125145/1‑141 (MQ=17)
                                                  tAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTaa                                                                                      <  2:292592/149‑1 (MQ=11)
                                                   aGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtctttctt                                                                                             <  1:1001282/141‑1 (MQ=17)
                                                   aGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtctttctt                                                                                             >  1:608624/1‑141 (MQ=17)
                                                    gCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGtctttcttt                                                                                            >  1:138201/1‑140 (MQ=17)
                                                       tgatgCTAATTTGGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATTCTTTGATACCTTGTCTTTCTTACTTTAATATGa                                                                                 >  2:637188/1‑149 (MQ=25)
                                                        gatgCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACttt                                                                                        >  1:969033/1‑141 (MQ=21)
                                                          tgCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATCTGACgg                                                                              >  2:795957/1‑149 (MQ=25)
                                                           gCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTGTTTTTATATAGAGCGTAAATATACTCAATAGCTTTTAAAGTATTCGTTGGTGTTTTGATACTTTGCTACGTCGTCTTTCttaatttaat                                                                                     >  1:353941/1‑141 (MQ=11)
                                                             tAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAatat                                                                                   >  1:25375/1‑141 (MQ=21)
                                                              aaTTTCGTGGCATGTCGAAAATCCGTAGATCTGAAGAGACCTGCGTTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGAt                                                                          <  2:232488/149‑1 (MQ=255)
                                                              aaTTTCGTGGCATGGGGAAAATCCGTAGGTCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTGAATATg                                                                                  <  1:79118/141‑1 (MQ=11)
                                                              aaTTTCGTGGCATGGCGAAAATCCGTAGATCTGACGAGACCTGCGGTTCTTTTTATAGAGAGCGTACATACATTCCATACCTTTTAACGTATTCTTTGTTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATg                                                                                  >  1:456431/1‑141 (MQ=11)
                                                                tttCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGAc                                                                                <  1:539638/141‑1 (MQ=25)
                                                                tttCGTCGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGAc                                                                                >  1:753727/1‑141 (MQ=25)
                                                                 ttCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTCGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCtt                                                                       <  2:263861/149‑1 (MQ=255)
                                                                  tCGTGGCATGGGGAAAATCCGTAGATCTGAAGTGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTg                                                                      <  2:690726/149‑1 (MQ=11)
                                                                  tCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACgg                                                                              >  1:326136/1‑141 (MQ=25)
                                                                   cggggCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGc                                                                     <  2:654487/146‑1 (MQ=14)
                                                                    gTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTg                                                                            <  1:85107/141‑1 (MQ=255)
                                                                     tGGTATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGa                                                                           <  1:475969/141‑1 (MQ=14)
                                                                      ggCATGGGGAAAATCCGTAGATCTGGAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCGGTATTGGTACTTTGTTATCTTGTCTTTCTTACTTTAATATTACGGTGAt                                                                          >  1:629255/1‑141 (MQ=11)
                                                                        catgcgaaaagaccGTAGATCTGAATATTCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAAt                                                                <  2:916111/137‑1 (MQ=14)
                                                                        cATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCt                                                                        >  1:42836/1‑141 (MQ=38)
                                                                         aTGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTCTCTTACTTTAATATGACGGTGATCtt                                                                       <  1:741352/141‑1 (MQ=255)
                                                                            gCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAgg                                                            <  2:471190/149‑1 (MQ=255)
                                                                              gAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGtt                                                          <  2:732856/149‑1 (MQ=38)
                                                                                   tCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGACACCTAGGCTTCCTTACTTTAATATGACGGTGATCTTGCTCAATGAg                                                             >  1:1141149/1‑141 (MQ=11)
                                                                                   tCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAg                                                             <  1:263106/141‑1 (MQ=255)
                                                                                    ccGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAg                                                    <  2:708897/149‑1 (MQ=38)
                                                                                    ccGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAgg                                                            <  1:439656/141‑1 (MQ=255)
                                                                                    ccGTAGATCTCAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGAATTCAGACTTTGATATCTTGTATTTCTTACCTTAATATGACGGTGATCTTGCACAATGAgg                                                            <  1:573282/141‑1 (MQ=11)
                                                                                    ccGGAGATTTTAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAgg                                                            <  1:415477/141‑1 (MQ=14)
                                                                                          aTCTGAAGAGACCTACGGTTCTTTGTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATAttt                                              >  2:465563/1‑149 (MQ=11)
                                                                                            cTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAg                                                    >  1:118391/1‑141 (MQ=255)
                                                                                             tGAATAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCCTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGa                                           <  2:422726/149‑1 (MQ=255)
                                                                                             tGAAGTGACCTGCGGTTCTTTTTATCTTGGTCTTAAATACACTCAATTCGTTTTAAATTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGa                                                   <  1:1082404/141‑1 (MQ=14)
                                                                                             tGAAGAGACCTGCGGTTCTTTTTATATAGTGCGTAAATACACTCAATAGCTGTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGa                                                   <  1:1015401/141‑1 (MQ=255)
                                                                                             tGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGa                                           <  2:11167/149‑1 (MQ=38)
                                                                                              gAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTTTGTTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGAt                                          <  2:214458/149‑1 (MQ=14)
                                                                                                 gagaCCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATAtt                                               <  1:217506/141‑1 (MQ=38)
                                                                                                 gagaCCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTa                                       <  2:758626/149‑1 (MQ=38)
                                                                                                 aggtcctagggTTTTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGTCGGTGATCTTGCTCAATGAGGTTATTCAGATAtt                                               <  1:198675/132‑1 (MQ=11)
                                                                                                  agaCCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATAttt                                              >  1:301568/1‑141 (MQ=255)
                                                                                                      ctacGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTTCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATg                                  <  2:178111/146‑1 (MQ=255)
                                                                                                        gCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTCATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATGTTTCGATGt                                        <  1:767217/141‑1 (MQ=255)
                                                                                                                ttttATATAGGGCGTAGATACACTCAATTCTGTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATggc                                <  1:124049/141‑3 (MQ=14)
                                                                                                                ttttATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGATGTTATTCGGATTTTTCGAGGTACAATGGCAGGCAGgt                        >  2:343964/1‑149 (MQ=14)
                                                                                                                ttttATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATggc                                <  1:1072635/141‑3 (MQ=255)
                                                                                                                 tttATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCa                               >  1:377728/1‑141 (MQ=255)
                                                                                                                 ttgatatgaggCGGAAGTACATTCAGTGCCTTTTAACGGATTCTTTGGAGTATTGATACTTGGATATCTTGTCTTTCTTACTTTAAGATGACGGTGATCTTGCGCAATGAGGTTATTCAGATATTTCGATGTACAATGACa                               <  1:912564/131‑1 (MQ=14)
                                                                                                                  ttATATTGAGGGTAAATACACTCAATTCCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAg                              <  1:893840/141‑1 (MQ=11)
                                                                                                                       taGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAgg                         <  1:334724/141‑1 (MQ=255)
                                                                                                                        agagCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgt                        >  1:1056618/1‑141 (MQ=255)
                                                                                                                         gagCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagttta               >  2:849031/1‑149 (MQ=255)
                                                                                                                          agCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagtttca              >  2:672518/1‑147 (MQ=255)
                                                                                                                          agCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgttt                      >  1:499131/1‑141 (MQ=255)
                                                                                                                          agCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTGTGATATCTTGTCTTTCTTACTTTAATATGACGGTGCTCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgttt                      >  1:658070/1‑141 (MQ=255)
                                                                                                                          agCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTGTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGCGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaggtttaa              >  2:768573/1‑149 (MQ=14)
                                                                                                                           gCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTaaa             >  2:520694/1‑149 (MQ=255)
                                                                                                                            cGTACATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaa                    >  1:726371/1‑141 (MQ=255)
                                                                                                                            cGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaa                    >  1:181774/1‑141 (MQ=255)
                                                                                                                             gTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAg           <  2:382163/149‑1 (MQ=255)
                                                                                                                              tAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagt                  >  1:835511/1‑141 (MQ=255)
                                                                                                                               aaaTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCt         <  2:136404/149‑1 (MQ=255)
                                                                                                                                aaTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagttt                <  1:994724/141‑1 (MQ=255)
                                                                                                                                aaTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagttt                >  1:388066/1‑141 (MQ=255)
                                                                                                                                  tACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagtttaa              >  1:234870/1‑141 (MQ=255)
                                                                                                                                  tACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAACTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgttgaagtttaa              >  1:644716/1‑141 (MQ=255)
                                                                                                                                  tACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGCGGTTATTCAGATATTTCGATGTACAATGGCAGTACGgtttaagtttaa              >  1:1164638/1‑141 (MQ=14)
                                                                                                                                  tACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACGATGGCAGTCAGgtttaagtttaa              >  1:1099988/1‑141 (MQ=255)
                                                                                                                                  tACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGATCAATGAGGTTCTTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagtttaa              >  1:589/1‑141 (MQ=255)
                                                                                                                                  tACACTCAATACCTATTAAAGTATGCCTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTTCTTTAATATAACGGTATTCTTGCTCACTGAAGTTATTCAAGTATTTCGATGTACAATGGCCGTCAGgtttaagtttaa              >  1:519381/1‑141 (MQ=14)
                                                                                                                                   acacTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTaa     >  2:323378/1‑149 (MQ=255)
                                                                                                                                   acacTCAATACCTTTTAAAGTATGCTTTGCTGTATTGAGACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACCATGGCAGTCAGGTTTAAGTTTAAAAGCTTTaa     <  2:596169/149‑1 (MQ=14)
                                                                                                                                      ttCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGc          <  1:278105/141‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                                    
AAAAATATAGCTAACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTA  >  CP000730/35836‑36118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: