Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8480CA71.0% 388.8 / 271.5 321intergenic (‑931/‑237)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (44/49);  new base A (130/98);  total (174/147)
Fisher's exact test for biased strand distribution p-value = 1.38e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.09e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 321 total aligned reads displayed.

TCTCATAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAA  >  CP000730/1929703‑1929985
                                                                                                                                                 |                                                                                                                                               
    aTAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAgagg                                                                                                                                          <  2:772594/149‑1 (MQ=255)
          tttGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGgtgt                                                                                                                                    <  2:186946/149‑1 (MQ=255)
           ttGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCagagag                                                                                                                                           <  1:196346/141‑1 (MQ=255)
               ccAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGaggagg                                                                                                                                       >  1:720508/1‑141 (MQ=255)
                  aTTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑Tg                                                                                                                       >  2:627598/1‑149 (MQ=255)
                          tAGACGATTAAATCTATCAGATAGAATAATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGACGATGATATAATAGTAGAGTAGCCTATCTCTCAGGCGTCAATTTAGATGAAGGGAGGAGGTGTC‑T‑AA‑G‑G‑Tg                                                                                                                       >  1:1178892/1‑141 (MQ=255)
                                     aTCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑Atttt                                                                                                           >  1:399065/1‑141 (MQ=255)
                                       ctaccagtttcaaTCATATAACTTATCAGAAGCAATTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTAGCCTATTTCTCAGGCGTCAATTTAGACGACGAGCAGAGGTGCA‑T‑AA‑A‑A‑AAACGCTT‑ATTTTct                                                                                                         <  1:1182676/130‑2 (MQ=255)
                                            aGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTcac                                                                                                    <  1:776554/141‑1 (MQ=255)
                                                        ataACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCa                                                                                        <  1:888089/141‑1 (MQ=255)
                                                                   atcggaagtagatatgCTTGTATATTCACAGATGGTATAATACTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                            >  1:140194/15‑141 (MQ=255)
                                                                   atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                            >  1:92885/15‑141 (MQ=255)
                                                                   atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                            >  1:125893/15‑141 (MQ=255)
                                                                   atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                            <  1:706368/127‑1 (MQ=255)
                                                                   atcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTCGc                                                                            >  1:760358/15‑141 (MQ=255)
                                                                    tcggaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCt                                                                           >  1:938995/14‑141 (MQ=255)
                                                                      ggaagtcgctatgCTTGTATATTCACAGATGTTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgt                                                                         <  1:1011084/130‑1 (MQ=255)
                                                                      gCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTg                                                                  >  2:23507/1‑149 (MQ=255)
                                                                       gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                        <  1:163083/131‑1 (MQ=255)
                                                                       gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                        <  1:1157047/131‑1 (MQ=255)
                                                                       gaagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCtgtg                                                                        <  1:675437/131‑1 (MQ=255)
                                                                        aagtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGc                                                                       <  1:950391/132‑1 (MQ=255)
                                                                         agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                      <  1:908506/133‑2 (MQ=255)
                                                                         agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                              <  2:49597/141‑2 (MQ=255)
                                                                         agtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                              >  2:323395/9‑148 (MQ=255)
                                                                         aggagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGct                                                                      <  1:1117770/133‑2 (MQ=255)
                                                                          gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                             <  2:374996/142‑3 (MQ=255)
                                                                          gtagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                             <  2:892144/142‑3 (MQ=255)
                                                                          gTGCCTGTGCTTGTATATTGGACGATGATATAATAGTATAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGtt                                                              <  2:365308/149‑1 (MQ=255)
                                                                           tagatatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTGATCAGTGGCtgtgatgt                                                                    >  1:799901/7‑137 (MQ=255)
                                                                           tGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGttt                                                             <  2:296770/149‑1 (MQ=255)
                                                                           tGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGCCGCCTATCTCTCAGGCGTCAATGTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGGGCCATTGCGttt                                                             <  2:351621/149‑1 (MQ=255)
                                                                               tatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatac                                                        <  2:741576/147‑5 (MQ=255)
                                                                               tatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatac                                                        >  2:818008/3‑145 (MQ=255)
                                                                                gtgCTTGTATATTTGCCGAGGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTc                                                        <  2:788912/149‑1 (MQ=255)
                                                                                atgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatact                                                       <  2:767548/148‑9 (MQ=255)
                                                                                 tgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACtt                                                      >  2:433207/1‑149 (MQ=255)
                                                                                  gCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                             >  1:374894/1‑139 (MQ=255)
                                                                                      gTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTACGtttttt                                                          >  1:20743/1‑141 (MQ=255)
                                                                                      gTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATTT‑‑ACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATG‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                         >  1:44024/1‑138 (MQ=255)
                                                                                       tataTTCACAGATGGTATAATAATAGCGTCGCCTATCTCTCGGGCGTAAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTGTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatac                                                        <  1:415431/141‑5 (MQ=255)
                                                                                        atatTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTc                                                        <  1:502851/141‑1 (MQ=255)
                                                                                         tattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                              <  2:908225/141‑2 (MQ=255)
                                                                                          ttttggcgtgtatgtaataGGAGAGTCGCCTATGTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCtt                                                      <  1:243640/127‑1 (MQ=255)
                                                                                           ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                            >  2:587776/7‑146 (MQ=255)
                                                                                           ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                            >  2:282875/7‑149 (MQ=255)
                                                                                            ttGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTTCAAAGACAGT‑ATATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAg                                            >  2:681680/1‑149 (MQ=255)
                                                                                            tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                           >  2:547810/6‑149 (MQ=255)
                                                                                            tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCAGT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTCTTGCGTATTATACTTATTGGCTTAGt                                           >  2:573710/6‑149 (MQ=255)
                                                                                             cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCCGTGGCTGTGCTGTTGCGTATTATACTCATTg                                                  >  1:523040/5‑141 (MQ=255)
                                                                                                agatggtATAATAATAGAGGCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAc                                       <  2:756371/148‑1 (MQ=255)
                                                                                                 gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                              <  1:446711/141‑2 (MQ=255)
                                                                                                 gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                              <  1:227782/141‑2 (MQ=255)
                                                                                                 gatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                              <  1:581256/141‑2 (MQ=255)
                                                                                                 gatggtAAAATAATAGATTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtt                                              <  1:464737/141‑2 (MQ=255)
                                                                                                  atggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑CTT‑TGCTAATC‑ATTTTAGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaagcgc                                     >  2:159004/5‑144 (MQ=255)
                                                                                                  aggggataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGGTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta                                             >  1:635989/6‑139 (MQ=255)
                                                                                                   tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                            >  1:38010/4‑141 (MQ=255)
                                                                                                   tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtttg                                            >  1:563137/4‑138 (MQ=255)
                                                                                                    ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                           >  1:794117/3‑141 (MQ=255)
                                                                                                    ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                           >  1:1100556/3‑141 (MQ=255)
                                                                                                    ggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                           >  1:815124/3‑141 (MQ=255)
                                                                                                    ggtataATAAGCGAGGCGCTTATATCTCATGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                           <  1:484689/139‑1 (MQ=255)
                                                                                                      tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaa                                         >  1:55829/1‑140 (MQ=255)
                                                                                                       ataatcatcgagTCGCCTAATTCACAGGCTTCAATT‑‑GACGAATAGAGGAGGTGTA‑TCAC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                <  2:213967/140‑4 (MQ=255)
                                                                                                        taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaac                                       <  1:1059627/141‑4 (MQ=255)
                                                                                                        taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                               >  2:394344/1‑145 (MQ=255)
                                                                                                         aataatAGAGTCGCCTATCTCTCAGGCGTCAAGT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                              >  2:600586/1‑144 (MQ=255)
                                                                                                          ataatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTATTAAACga                                     >  1:1074635/5‑140 (MQ=255)
                                                                                                            aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCCTATGTGTCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                           <  2:883890/147‑9 (MQ=255)
                                                                                                             atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                          >  2:847857/2‑140 (MQ=255)
                                                                                                              tagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATCCAAAATa                          >  2:266011/1‑149 (MQ=255)
                                                                                                              tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                         >  2:19844/1‑139 (MQ=255)
                                                                                                              tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                 >  1:965368/1‑139 (MQ=255)
                                                                                                               agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                        <  2:649163/149‑12 (MQ=255)
                                                                                                                gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTCAACGCaacaagtaattaat                       >  2:580964/1‑137 (MQ=255)
                                                                                                                gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                       >  2:472405/1‑137 (MQ=255)
                                                                                                                  gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACaa                              <  1:992595/141‑1 (MQ=255)
                                                                                                                  gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTg                      >  2:119760/1‑149 (MQ=255)
                                                                                                                  gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCAAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                             >  1:728744/1‑135 (MQ=255)
                                                                                                                    cGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTACGTTTTTTTCTTATTGGCTAATTAGACGCAATACAAAATAGGTGAc                    <  2:520730/149‑1 (MQ=255)
                                                                                                                     gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                          <  1:622571/141‑10 (MQ=255)
                                                                                                                     gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                          >  1:35484/1‑132 (MQ=255)
                                                                                                                     gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCAAATCATAGCACCAGTCATACGTAGCTGTGCTGTTGCGTATTATACTTAGTGGCTTAGTAAAcagaacaaataatt                          >  1:1124465/1‑128 (MQ=255)
                                                                                                                      ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGATGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                         >  1:1055549/1‑131 (MQ=255)
                                                                                                                      ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                         >  1:102692/1‑131 (MQ=255)
                                                                                                                      ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TA‑C‑TTTGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                         <  1:984505/141‑11 (MQ=255)
                                                                                                                       cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGCCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTAAGTAAACGCaacaaataattaa                        >  1:61035/1‑130 (MQ=255)
                                                                                                                        tATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAgg                        >  1:319228/1‑141 (MQ=255)
                                                                                                                        tATCTCTCAGGCGTCAATT‑‑GACGAGGAGAGGAGGTGCA‑T‑TA‑CTT‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTCAACGCaaccaataattaat                       >  1:347988/1‑129 (MQ=255)
                                                                                                                        tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaaa                       >  1:114711/1‑129 (MQ=255)
                                                                                                                        tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaagaattaat                       >  1:276518/1‑129 (MQ=255)
                                                                                                                        tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaaaaataattcga                       >  1:588579/1‑129 (MQ=255)
                                                                                                                         aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑T‑TACT‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                      >  1:1114693/1‑128 (MQ=255)
                                                                                                                          tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATT‑AC‑T‑T‑TGCTAATC‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                     <  1:641754/141‑15 (MQ=255)
                                                                                                                             ctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCg           >  2:710006/1‑149 (MQ=255)
                                                                                                                              tcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGc          >  2:345550/1‑149 (MQ=255)
                                                                                                                                 ggCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACAtata               <  1:745076/141‑1 (MQ=255)
                                                                                                                                           tAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAACTAGGTGCCATATAGCCGCAcaca     >  1:169563/1‑138 (MQ=255)
                                                                                                                                             gACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAATGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCaaaa   <  1:860046/141‑3 (MQ=255)
                                                                                                                                                 |                                                                                                                                               
TCTCATAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑T‑AA‑G‑G‑TGATGCTT‑ATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAA  >  CP000730/1929703‑1929985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑