| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2618806 | 68 (1.090) | 3 (0.050) | 3/264 | 5.7 | 4.5% | coding (462/1809 nt) | pgcA | bifunctional phosphoglucomutase/phosphomannomutase |
| ? | CP000730 | = 2618808 | 62 (1.050) | coding (464/1809 nt) | pgcA | bifunctional phosphoglucomutase/phosphomannomutase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2618660‑2618806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctaatACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC < CP000730/2618808‑2618670 GGTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACAGCTTTCAACTGAATTCGCCCAAATAATT > 1:331403/1‑141 GTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGTCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACATTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTG < 1:489663/141‑1 GTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGGCATCTTTCAACTGAATTCGCCCAAATAATTG > 1:508130/1‑141 GTGAAGGTCGACTTAATAAGTTTACTAGTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATGAGACATCTTTCAACTGAATTCGCCCAAATAATTG < 1:809045/141‑1 TGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGCCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGC < 1:1222084/141‑1 AAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTA < 1:357006/141‑1 tctACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAAcgt < 1:152669/138‑4 AAAAATTGGCATTAGGTTTATCGCGTTATTTAAATGCCCAAACAAACAGTTCACGAAGGGTCATTCATTATGATATTAGGCATCTTTCAACTGAATTCGCCCAAATAATTGCTAATACATTAGCAATTATTTGGGCGAATT < 1:38809/141‑1 CGCGTTATTTAAATGCCCAAACAAACAGGCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATAT < 1:538083/141‑1 CAGTCCAAGAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCCCCCAAATAATTGCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACT < 1:353232/141‑1 ggtcTGCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACT < 1:358038/137‑1 GCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTA > 1:123596/1‑141 CTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAA > 1:1047256/1‑141 CTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAA > 1:721980/1‑141 ATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC > 1:1327557/1‑141 ATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC > 1:12143/1‑141 ATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC > 1:843325/1‑141 GGTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2618660‑2618806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctaatACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC < CP000730/2618808‑2618670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |