| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 516433 | NA (NA) | 3 (0.030) | 3/248 | NT | NA | noncoding (1728/2921 nt) | rrl1 | 23S ribosomal RNA |
| ? | CP000730 | = 516448 | NA (NA) | noncoding (1743/2921 nt) | rrl1 | 23S ribosomal RNA | |||||
TCTTCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/516289‑516433‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accccTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTG < CP000730/516448‑516309 TCTTCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGA < 2:205050/141‑1TCTTCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGA < 2:1127433/141‑1 CTTCGAGTCGTTGATTTCACACTGCCGAGGAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGAC > 2:356018/1‑141 CTTCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGAC > 2:361990/1‑141 CTTCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGAC > 2:156085/1‑141 CTTCGAGTCGTTGATTTAACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAAATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGCACTCGGCAACATGAC > 2:1124637/1‑141 TTCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACC > 2:96212/1‑141 TTCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACC < 2:936588/141‑1 TCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGGTGAGAAGTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCC > 1:48752/1‑141 TCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCC > 1:264071/1‑141 TCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCC < 2:400183/141‑1 TCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCC > 1:476428/1‑141 TCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCC > 2:1103829/1‑141 TCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGACAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAACTCTAAGGTGAGCGAGCGAACTCCCGTTAAGGAACTCGGCAAAACGACCC > 2:135010/1‑141 TCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCCAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCC < 1:1058394/141‑1 CGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCCC < 1:499279/141‑1 CGAGTCGTGGAGTGCACACTGCCGAGAAAAGCCACTAGATAGAAAATAGGGGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCCC < 2:212770/141‑1 TGATTTCACAGTGCCGAGAAAAGCCTCTAGATAGAAAATAGGGGCGCGGACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACNCTCNTTAAGGAACTCGGCNNAATGCCCCCTTCTCCCG < 1:1095897/141‑1 GGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCCCTTCTCCCGAAGTTACGGGGTCATTT > 1:748398/1‑118 GGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCCCTTCTCCCGAAGTTACGGGGTCATTT < 2:748398/118‑1 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCAGCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC < 1:621684/141‑1 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC > 2:510069/1‑141 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC > 2:602192/1‑141 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC > 2:1147793/1‑141 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC > 2:48031/1‑141 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC > 1:362566/1‑141 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC < 2:245873/141‑1 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC > 1:139325/1‑141 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC < 1:913394/141‑1 ACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGCTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGC > 2:527659/1‑141 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCA < 1:1055070/141‑1 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCA > 1:453476/1‑141 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCA > 2:789836/1‑141 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCA < 2:598633/141‑1 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCA > 2:843009/1‑141 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCA > 1:723369/1‑141 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGATTTTCTCGGCA > 1:943076/1‑141 CCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAG < 2:173666/141‑1 CCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAG < 2:877217/141‑1 CCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAG < 2:360970/141‑1 CCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAG < 2:657290/141‑1 CCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAG < 2:1076159/141‑1 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGT > 1:195279/1‑141 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGT > 1:321606/1‑141 CTTCTCCCGGAGTTTCGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTAACCGTAGAATTCTCATCTTGACTTCATGTGCCGGTTTGCGGTACGGGCAACTACTTTCTATCTAGAGGCTTTTCTCGGCAGTG < 1:773417/141‑1 CTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTG < 2:1107453/141‑1 CTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTG < 2:224381/141‑1 CTTCGCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCTCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGAGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTG < 2:900179/141‑1 TCTTCGAGTCGTTGATTTCACACTGCCGAGAAAAGCCTCTAGATAGAAAATAGGTGCCCGTACCGCAAACCGACACAGGTAGTCAAGATGAGAATTCTAAGGTGAGCGAGCGAACTCTCGTTAAGGAACTCGGCAAAATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/516289‑516433‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accccTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCGCTCGCTCACCTTAGAATTCTCATCTTGACTACCTGTGTCGGTTTGCGGTACGGGCACCTATTTTCTATCTAGAGGCTTTTCTCGGCAGTG < CP000730/516448‑516309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |