| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 528464 = | 76 (0.770) | 4 (0.050) | 3/230 | NT | 5.6% | intergenic (+5/‑162) | tatD/rnmV | TatD family deoxyribonuclease/hypothetical protein |
| ? | CP000730 | 528541 = | 68 (0.770) | intergenic (+82/‑85) | tatD/rnmV | TatD family deoxyribonuclease/hypothetical protein | |||||
CCTTCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTTCTCACTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/528617‑528464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGT > CP000730/528541‑528678 CCTTCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGAT > 2:1162613/1‑141CCTTCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGAT > 2:859706/1‑141CCTTCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGAT < 1:743952/141‑1CCTTCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGAT > 2:1099588/1‑141CCTTCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCACCGTTTCCATTTATTGCGGTGAT > 2:101082/1‑141 TCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGCGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTT > 1:675618/1‑141 TCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTT > 1:937060/1‑141 CCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTT > 2:435137/1‑141 CCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTT > 2:509317/1‑141 ATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTTCTCACT < 1:1117322/141‑1 TTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTTCTCACTT < 2:884337/141‑1 TCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTTCTCACTTT < 1:576734/141‑1 AAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATC‑TTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAA > 1:584805/1‑141 GTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATT > 2:1094601/1‑141 GTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATT > 2:754892/1‑141 GAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAG > 1:270265/1‑141 TCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGAT < 2:1014463/141‑1 CTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATA < 1:91431/141‑1 TCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAG < 1:796905/141‑1 TCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAG < 1:762441/141‑1 CACTTTTTTAAATTAAAATATCGGGCATGTGGAATTCGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGC < 1:839492/141‑1 CTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGT > 2:480102/1‑141 TTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTG < 1:297148/141‑1 TTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTG > 2:693583/1‑141 TTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGT < 2:74554/141‑1 TTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGT < 2:119423/141‑1 TTTTTAAAATAAAATATCGTGCATGTGAACTACGTGCGATAGAGATGGTAAAAGCCTTGGTATTGAGAATTGTAGGACGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGT < 1:297653/141‑1 CCTTCCTACAATTCTTAATTTCAAAGCTCTAACCATCTCTATCGCACGTATTCCACATGCACGATATTTTAATTTAAAAAAGTGAGAAAGAACCATAGCATATTAAACGAATATAGCATCGTTTACATTTATGGCGGTGATCTTTCTCACTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/528617‑528464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGT > CP000730/528541‑528678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |