| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2674542 | 116 (1.170) | 3 (0.030) | 3/238 | NT | 2.8% | intergenic (‑21/+247) | ptsG/ilvB2 | PTS family glucose/glucoside (glc) porter component IIABC/pyruvate oxidase |
| ? | CP000730 | = 2674577 | 100 (1.090) | intergenic (‑56/+212) | ptsG/ilvB2 | PTS family glucose/glucoside (glc) porter component IIABC/pyruvate oxidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCTAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2674396‑2674542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcatgaGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTAATG < CP000730/2674577‑2674438 CGCTAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAG > 2:667436/1‑141 CTAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGC < 1:651206/141‑1 ATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCATACAATTTCTTAAACATATAAACTTCCCCTATCTCAATTTCCGCTTCCTTGTACAAAAAAAGCAGGCATG > 1:291226/1‑141 ATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATG > 1:1114678/1‑141 ATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATG > 1:1154083/1‑141 ATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATG < 1:444870/141‑1 ATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATG < 2:117284/141‑1 ATAAAATACCAGCTGATGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATAAGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGAAAAAAAAAAAAAAAAAAGCAGGCATG < 2:770922/141‑1 TAACATTAAGGCTTTACCGAGACGTTGCAATTGGTCAAACAATGTCTTAAACATATAATCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAGTAGTCTTGTTT < 1:1134215/141‑1 CTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTAC‑AAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTG > 1:1091874/1‑96 CTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTAC‑AAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTG < 2:1091874/96‑1 atcCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTA < 1:493644/138‑1 GCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAA > 1:215600/1‑141 GGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCA < 1:518287/141‑1 GCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTTTTTTTTGTATCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATGGTTTGGACAATTGCAACGTATCGGTAAAGCAT > 2:1004564/1‑141 GCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCAT > 1:934637/1‑141 GCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCAT > 1:502781/1‑141 GCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCAT > 1:760791/1‑141 CATGAGCAAACAACCGCACTATGAGAATAGTCTTGTCTCTTCATGCCTCCTTCTTTTATACATGGACACGGACATCGACAAAGGGCATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATT < 1:113561/141‑1 ATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTATATTTTAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTA > 2:69384/1‑141 ATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTA > 2:725357/1‑141 TGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTAA > 1:284772/1‑141 AGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTAATG < 2:318245/141‑1 AGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTAATG < 1:803713/141‑1 CGCTAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2674396‑2674542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcatgaGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTAATG < CP000730/2674577‑2674438 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |