| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2179606 = | NA (NA) | 4 (0.040) | 4/244 | NT | 100% | intergenic (‑50/+262) | rrl4/rrs4 | 23S ribosomal RNA/16S ribosomal RNA |
| ? | CP000730 | 2179610 = | 0 (0.000) | intergenic (‑54/+258) | rrl4/rrs4 | 23S ribosomal RNA/16S ribosomal RNA | |||||
ACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCATCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGC > CP000730/2179470‑2179750 | tgcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtcagtagaagatagatcggaccaagcgaaaccgattgtatagagagggttaaataagcttgaattcataagaaataatcgctagtgttcgaaag > 1:237081‑M2/141‑141 (MQ=255)tgcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaag < 2:516299‑M2/1‑1 (MQ=255)tgcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaag < 2:7518‑M2/1‑1 (MQ=255)tgcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaag > 1:575951‑M2/141‑141 (MQ=255)tgcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaag < 1:356223‑M2/1‑1 (MQ=255) gcgagcgcttgactaaaaagacattgtagattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa < 2:49368‑M2/2‑1 (MQ=255) gcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa < 1:964426‑M2/2‑1 (MQ=255) gcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa > 2:413497‑M2/140‑141 (MQ=255) cgatcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGaa < 2:828037‑M2/3‑1 (MQ=255) cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgcgtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGaa < 1:1011023‑M2/3‑1 (MQ=255) cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGaa > 1:202749‑M2/139‑141 (MQ=255) cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGaa < 2:433765‑M2/3‑1 (MQ=255) cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGaa < 1:655370‑M2/3‑1 (MQ=255) gagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAac > 1:810642‑M2/138‑141 (MQ=255) agcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagatttttccaagtaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca > 1:237768‑M2/137‑141 (MQ=255) agcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca < 1:1014510‑M2/5‑1 (MQ=255) agcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca < 1:1144215‑M2/5‑1 (MQ=255) agcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca < 2:753884‑M2/5‑1 (MQ=255) agcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca < 2:1108739‑M2/5‑1 (MQ=255) agcgcttgactaaaaagaaattatacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca < 2:144330‑M2/5‑1 (MQ=255) gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac > 2:188268‑M2/136‑141 (MQ=255) gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac < 2:467131‑M2/6‑1 (MQ=255) agcgcttgactaaaaagagatggtacattgaaaactagatagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcganaGAacac > 2:898373‑M2/136‑141 (MQ=255) cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAACACt > 2:537680‑M2/135‑141 (MQ=255) cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAACACt > 2:482245‑M2/135‑141 (MQ=255) cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAACACt > 1:1052937‑M2/135‑141 (MQ=255) ctaaaaagaaatggtaaatggaaaactagaagaagaagtaaaatatagattttaccaagcaaagccgagtgactaaagagttttaaagaagcttgaattcataagaaataatcgctagtgttctttcGAACACTAGCGatt < 2:428937‑M2/14‑1 (MQ=255) aactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataatcttgaattcataataaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCAAGCTTAt < 2:207488‑M2/37‑1 (MQ=255) agtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAActc < 1:1153680‑M2/46‑1 (MQ=255) ccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac > 2:1083193‑M2/64‑69 (MQ=255) ccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac < 1:1083193‑M2/6‑1 (MQ=255) gttcgaaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTc > 2:1041830‑M2/9‑141 (MQ=255) cgaaaGAACACTCGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCGTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCa > 2:550378‑M2/6‑141 (MQ=255) cgaaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATACACTCGGTTTTGCTTGATAAAATCTACATTTTACTTACTTATCTAGTTTTCAATGTACCAATTCTTTTTAGTCAAgcgcttcca > 2:620918‑M2/6‑137 (MQ=255) aaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAtt < 1:319940‑M2/114‑1 (MQ=255) aaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAtt > 2:319940‑M2/4‑117 (MQ=255) aaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATa > 2:1110862‑M2/4‑141 (MQ=255) aaaGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATa > 2:609824‑M2/4‑141 (MQ=255) GAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGc < 1:68246‑M2/141‑1 (MQ=255) GAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGc < 2:700504‑M2/141‑1 (MQ=255) GAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGc < 1:739585‑M2/141‑1 (MQ=255) GAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGc < 1:820528‑M2/141‑1 (MQ=255) GAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGc < 2:303942‑M2/141‑1 (MQ=255) GAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGc < 1:669476‑M2/141‑1 (MQ=255) | ACAGCTCCCCAAAGCATATCGTCGTTAGTAACGTCCTTCATCGGCTTCTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCATCCTACAGGAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAATTTCTTTTTAGTCAAGCGCTCGCATAAGC > CP000730/2179470‑2179750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |