BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	849,656	G→A	57.4%	G261D (GGT→GAT)	yvcJ →	ATP‑binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	849,656	0	G	A	57.4%	45.2 / 128.8	101	G261D (GGT→GAT)	yvcJ	ATP‑binding protein
Reads supporting (aligned to +/- strand): ref base G (11/32); new base A (25/33); total (36/65)
Fisher's exact test for biased strand distribution p-value = 9.30e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01

Only 100 of 103 total aligned reads displayed.

AGGATTAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATGAGACAAATAAA  >  CP000730/849516‑849796

aGGATTAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCgg                                                                                                                                              >  2:858057/1‑141 (MQ=255)

 ggATTAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGt                                                                                                                                             >  1:241800/1‑141 (MQ=255)

   aTTAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTg                                                                                                                                           <  2:1048229/141‑1 (MQ=255)

    ttAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGt                                                                                                                                          <  1:388634/141‑1 (MQ=255)

    ttAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGt                                                                                                                                          >  2:986780/1‑141 (MQ=255)

     tAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTa                                                                                                                                         <  2:838441/141‑1 (MQ=255)

     tAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGAGTAAAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTa                                                                                                                                         <  2:401446/141‑1 (MQ=255)

      aGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGGCGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTAc                                                                                                                                        >  1:494497/1‑141 (MQ=255)

        aTAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACgg                                                                                                                                      >  1:666850/1‑141 (MQ=255)

          aaaGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGt                                                                                                                                    <  2:889765/141‑1 (MQ=255)

          aaaGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGt                                                                                                                                    >  2:623985/1‑141 (MQ=255)

           aaGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTg                                                                                                                                   >  1:900008/1‑141 (MQ=255)

           aaGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTAAATTAGTAATTGCCATCGATTGTACGGGTg                                                                                                                                   >  1:1032582/1‑141 (MQ=255)

               cGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGaca                                                                                                                               <  2:464765/141‑1 (MQ=255)

               cGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGaca                                                                                                                               >  1:162273/1‑141 (MQ=255)

                gTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGacaa                                                                                                                              >  2:485957/1‑141 (MQ=255)

                gTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGacaa                                                                                                                              <  1:1183986/141‑1 (MQ=255)

                 tttATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGacaac                                                                                                                             <  1:959729/141‑1 (MQ=255)

                    ataATTATGTTATGAAATGGAAAGAGACGGAGATTATCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATc                                                                                                                          <  2:513677/141‑1 (MQ=255)

                      aaTTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGa                                                                                                                        <  1:278601/141‑1 (MQ=255)

                          atgttatgAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTg                                                                                                                    <  1:996817/141‑1 (MQ=255)

                           tgttatgAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGt                                                                                                                   <  1:690578/141‑1 (MQ=255)

                               atgAAATGGGAAGAGACGGAGATATTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGCAGGGAAATCTCAATTAGTAATTGCAATCGGTTGTACGGGTGGACAACATCGATCTGTAgta                                                                                                               >  1:83427/1‑139 (MQ=255)

                               atgAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCa                                                                                                               <  2:393291/141‑1 (MQ=255)

                               atgAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCa                                                                                                               >  1:440163/1‑141 (MQ=255)

                               atgAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCa                                                                                                               >  2:158450/1‑141 (MQ=255)

                                tgAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCAt                                                                                                              <  1:674907/141‑1 (MQ=255)

                                    aTGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGc                                                                                                          >  2:1129236/1‑141 (MQ=255)

                                      ggAAAGAGACGGAGATTTTCTTTGATAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCGTCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAg                                                                                                        <  1:839062/141‑1 (MQ=255)

                                      ggAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAg                                                                                                        <  1:966485/141‑1 (MQ=255)

                                       gAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGa                                                                                                       >  2:635857/1‑141 (MQ=255)

                                       gAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGa                                                                                                       >  1:405490/1‑141 (MQ=255)

                                          agatACGGAGATTTTCTTGTAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACg                                                                                                    <  2:475545/141‑1 (MQ=255)

                                          agagACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTCGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCGATCGGTTGTACGGGTGGACAACATCGCTCTGTAGCATTAGCAGAACg                                                                                                    <  1:880477/141‑1 (MQ=255)

                                          agagACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACg                                                                                                    <  1:675274/141‑1 (MQ=255)

                                          agagACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACg                                                                                                    <  2:239011/141‑1 (MQ=255)

                                            ggaCGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGGACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGAc                                                                                                  <  2:152104/140‑1 (MQ=255)

                                                   gaTTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTaa                                                                                           <  1:895210/141‑1 (MQ=255)

                                                   gaTTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTaa                                                                                           <  2:488439/141‑1 (MQ=255)

                                                    aTTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAAt                                                                                          <  1:1168648/141‑1 (MQ=255)

                                                    aTTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAAt                                                                                          <  1:271190/141‑1 (MQ=255)

                                                     ttttCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAAtt                                                                                         <  1:636292/141‑1 (MQ=255)

                                                         cTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCt                                                                                     <  1:116011/141‑1 (MQ=255)

                                                             gAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAAt                                                                                 <  2:1121117/141‑1 (MQ=255)

                                                              aaaaaTTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATg                                                                                <  2:155916/141‑1 (MQ=255)

                                                               aaaaTTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGa                                                                               <  2:156707/141‑1 (MQ=255)

                                                               aaaaTTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGa                                                                               <  1:862574/141‑1 (MQ=255)

                                                               aaaaTTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGa                                                                               <  2:26502/141‑1 (MQ=255)

                                                                atttaaaCTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGaa                                                                              <  2:695243/136‑1 (MQ=255)

                                                                   ttAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTa                                                                           >  1:700218/1‑141 (MQ=255)

                                                                     aaCTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTAtt                                                                         <  1:278515/141‑1 (MQ=255)

                                                                       cTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTg                                                                       <  1:996855/141‑1 (MQ=255)

                                                                        tGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGa                                                                      <  2:571948/141‑1 (MQ=255)

                                                                          aTTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAat                                                                    <  1:623132/141‑1 (MQ=255)

                                                                            ttGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAatat                                                                  <  2:257380/141‑1 (MQ=255)

                                                                            ttGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAatat                                                                  <  1:69923/141‑1 (MQ=255)

                                                                            ttGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAatat                                                                  <  1:107135/141‑1 (MQ=255)

                                                                              gTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATaa                                                                <  1:525751/141‑1 (MQ=255)

                                                                               ttAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAAt                                                               >  2:24030/1‑141 (MQ=255)

                                                                                tAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATg                                                              <  1:82213/141‑1 (MQ=255)

                                                                                 aGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGt                                                             >  1:820204/1‑141 (MQ=255)

                                                                                      ttATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTAtg                                                        <  2:1124086/141‑1 (MQ=255)

                                                                                       tATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTAtgt                                                       <  1:528865/141‑1 (MQ=255)

                                                                                       tATGATACCCGGGCATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTAtgt                                                       <  1:665138/141‑1 (MQ=255)

                                                                                        aTGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTAtgtg                                                      >  1:1040076/1‑141 (MQ=255)

                                                                                         tGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGc                                                     <  1:772115/141‑1 (MQ=255)

                                                                                          gATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGca                                                    >  1:455234/1‑141 (MQ=255)

                                                                                            tACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGcatc                                                  >  1:178067/1‑141 (MQ=255)

                                                                                                cGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAg                                              >  1:372681/1‑141 (MQ=255)

                                                                                                 gggTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAgg                                             <  2:809040/141‑1 (MQ=255)

                                                                                                   gTATAAGAAATAAGGGAAATCTCAAGTAGTAATTGCCAGCGGGTGTACGGGTGGACAACATGGATCTGTAGCAATAGCAGGGCGACGAGGTAGTTATCTAAATGAAGTATGTGAATATAATGTTTATGTGCATCATAgggg                                           <  2:140511/141‑2 (MQ=255)

                                                                                                   gTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGa                                           >  1:488015/1‑141 (MQ=255)

                                                                                                    tataAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGcgtccctatgat                                          <  2:735438/141‑12 (MQ=255)

                                                                                                    tataAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGAc                                          <  1:1000082/141‑1 (MQ=255)

                                                                                                    tataAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGAc                                          <  1:81260/141‑1 (MQ=255)

                                                                                                      taAAAAAGAAGGGAATTCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGc                                        <  1:435347/141‑1 (MQ=255)

                                                                                                        aaaaaGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATATGGACGcac                                      >  2:416950/1‑141 (MQ=255)

                                                                                                          aaaGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACat                                    >  2:689609/1‑141 (MQ=255)

                                                                                                          aaaGAAGGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACat                                    >  2:283950/1‑141 (MQ=255)

                                                                                                           aagaagGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACata                                   <  2:104808/141‑1 (MQ=255)

                                                                                                           aagaagGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACata                                   <  2:104748/141‑1 (MQ=255)

                                                                                                             gaagGGAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATAtt                                 <  2:842661/141‑1 (MQ=255)

                                                                                                              aagGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTg                                <  2:871755/141‑1 (MQ=255)

                                                                                                               agGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGa                               <  1:36575/141‑1 (MQ=255)

                                                                                                                gggAAATCTCAATTAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGaa                              >  1:610030/1‑141 (MQ=255)

                                                                                                                  gAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAg                            >  1:1113869/1‑141 (MQ=255)

                                                                                                                   aaaTCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGt                           >  2:977777/1‑141 (MQ=255)

                                                                                                                          aaTTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGAAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCgaga                    >  1:267834/1‑141 (MQ=255)

                                                                                                                           aTTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGAATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGaaaaaaaaaaaaa                   <  2:293664/141‑11 (MQ=255)

                                                                                                                            ttAGTAATTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGaaa                  >  1:66858/1‑141 (MQ=255)

                                                                                                                               gTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGaaaaaa               >  1:62157/1‑141 (MQ=255)

                                                                                                                                 aaTTGCCATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATg             >  1:617230/1‑141 (MQ=255)

                                                                                                                                   ttGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAAGGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATgag           <  1:324743/141‑1 (MQ=255)

                                                                                                                                      ccATCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATGAGACa        >  1:208228/1‑141 (MQ=255)

                                                                                                                                       cATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATGAGACaa       <  1:989246/141‑1 (MQ=255)

                                                                                                                                       cATCGGTTGTACGGGTGAAAAACATAGATATGTAGCATAAGCAGAAAGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAAAAAAAAAAAAAAATGAGACaa       <  2:1113869/141‑1 (MQ=255)

                                                                                                                                        aTCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATGAGACaaa      >  1:5683/1‑141 (MQ=255)

                                                                                                                                         tCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATGAGACAAAt     <  1:1153843/141‑1 (MQ=255)

                                                                                                                                         tCGATTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATGAGACAAAt     <  1:635857/141‑1 (MQ=255)

                                                                                                                                            gTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATGAGACAAATaaa  >  1:899146/1‑141 (MQ=255)

AGGATTAGATAAAGACGTTTATAATTATGTTATGAAATGGAAAGAGACGGAGATTTTCTTTGAAAAATTAACTGATTTGTTAGATTTTATGATACCCGGGTATAAAAAAGAAGGGAAATCTCAATTAGTAATTGCCATCGGTTGTACGGGTGGACAACATCGATCTGTAGCATTAGCAGAACGACTAGGTAATTATCTAAATGAAGTATTTGAATATAATGTTTATGTGCATCATAGGGACGCACATATTGAAAGTGGCGAGAAAAAATGAGACAAATAAA  >  CP000730/849516‑849796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`