Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 1,218,732 C→G 6.8% intergenic (+223/+40) USA300HOU_1145 → / ← fbpA possible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,218,7320CG 6.8% 334.5 / 12.7 100intergenic (+223/+40)USA300HOU_1145/fbpApossible 3‑demethylubiquinone‑9 3‑methyltransferase/fibrinogen‑binding protein
Reads supporting (aligned to +/- strand):  ref base C (46/47);  new base G (4/3);  total (50/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 103 total aligned reads displayed.

TTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGT  >  CP000730/1218594‑1218871
                                                                                                                                          |                                                                                                                                            
ttAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGacta                                                                                                                                            <  2:244075/141‑1 (MQ=255)
  aGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact                                                                                                                                          >  2:484336/1‑141 (MQ=255)
    cATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActtt                                                                                                                                        <  2:655840/141‑1 (MQ=255)
         tAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCtttt                                                                                                                                  >  1:50199/1‑141 (MQ=255)
         tAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCtttt                                                                                                                                  <  1:268799/141‑1 (MQ=255)
         tAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACAAAAGAAAGTAGTCctttcttatg                                                                                                                                  <  2:1105425/141‑4 (MQ=38)
          aGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTtg                                                                                                                                 >  1:562023/1‑141 (MQ=255)
           gTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTtgt                                                                                                                                <  2:612773/141‑1 (MQ=255)
             ttCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACGCCACCATAAGAAAGGACTACTTTCTTTTGTGa                                                                                                                              >  1:232117/1‑141 (MQ=255)
             ttCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACAAAAGAAAGTAGTCctttcttatggtga                                                                                                                              <  2:435440/141‑8 (MQ=37)
               cACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAgg                                                                                                                            >  1:305526/1‑141 (MQ=255)
               cACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAgg                                                                                                                            <  1:286596/141‑1 (MQ=255)
               cACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACAAAAGAAAGTAGTCctttcttatggtgagg                                                                                                                            <  2:432847/141‑10 (MQ=37)
                aCTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGgt                                                                                                                           >  2:666325/1‑141 (MQ=255)
                  tCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGgtgt                                                                                                                         <  1:654000/141‑1 (MQ=255)
                   cATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGtt                                                                                                                        >  1:372283/1‑141 (MQ=255)
                    aTTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGttt                                                                                                                       <  2:377403/141‑1 (MQ=255)
                     tttttAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTa                                                                                                                      >  2:1044182/1‑141 (MQ=255)
                     tttttAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTa                                                                                                                      <  1:533100/141‑1 (MQ=255)
                          aaaaTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGt                                                                                                                 >  1:1130894/1‑141 (MQ=255)
                           aaaTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTc                                                                                                                >  1:1020816/1‑141 (MQ=255)
                           aaaTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTc                                                                                                                >  1:730734/1‑141 (MQ=255)
                           aaaTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTc                                                                                                                >  1:292881/1‑141 (MQ=255)
                           aaaTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTc                                                                                                                >  2:1155520/1‑141 (MQ=255)
                           aaaTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTc                                                                                                                >  2:37933/1‑141 (MQ=255)
                           aaaTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGATTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTc                                                                                                                >  1:897961/1‑141 (MQ=255)
                             aTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGa                                                                                                              >  2:431253/1‑141 (MQ=255)
                             aTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGa                                                                                                              <  1:500187/141‑1 (MQ=255)
                             aTCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGa                                                                                                              <  1:384865/141‑1 (MQ=255)
                                  aaaGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACt                                                                                                         <  1:490556/141‑1 (MQ=255)
                                   aaGATAATTTGTTACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCCCTGAACGCATTAGATAATAAATAAACACCTCACCGTCAGAAAGGACTACTTTCTTTTGCGAGGTGTTTATTTGTCGTCTACtt                                                                                                        <  2:857002/141‑1 (MQ=255)
                                   aaGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACtt                                                                                                        <  2:857008/141‑1 (MQ=255)
                                    aGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTg                                                                                                       <  1:327416/141‑1 (MQ=255)
                                    aGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTg                                                                                                       <  1:1082016/141‑1 (MQ=255)
                                      atatTTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGAt                                                                                                     <  2:724179/141‑1 (MQ=255)
                                       tAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGAtt                                                                                                    <  1:1079019/141‑1 (MQ=255)
                                       tAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGAtt                                                                                                    <  1:887257/141‑1 (MQ=255)
                                         aTTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTAt                                                                                                  >  2:879110/1‑141 (MQ=255)
                                         aTTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTAt                                                                                                  >  1:1116169/1‑141 (MQ=255)
                                         aTTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTAt                                                                                                  >  1:696710/1‑141 (MQ=255)
                                         aTTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTAt                                                                                                  >  1:279754/1‑141 (MQ=255)
                                           ttGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGa                                                                                                <  2:327244/141‑1 (MQ=255)
                                               aaCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt                                                                                            <  2:180769/141‑1 (MQ=255)
                                                aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt                                                                                           <  2:673144/141‑1 (MQ=255)
                                                aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt                                                                                           <  2:1030553/141‑1 (MQ=255)
                                                aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt                                                                                           <  1:811259/141‑1 (MQ=255)
                                                aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt                                                                                           <  1:433591/141‑1 (MQ=255)
                                                 cTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGttt                                                                                          <  1:503680/141‑1 (MQ=255)
                                                 cTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGttt                                                                                          <  1:637865/141‑1 (MQ=255)
                                                  ttAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTAGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCa                                                                                        <  2:562921/141‑1 (MQ=255)
                                                    aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGCTTATGATTGTTTCAt                                                                                       >  1:991682/1‑141 (MQ=255)
                                                        gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt                                                                                   <  1:639074/141‑1 (MQ=255)
                                                            atACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa                                                                               <  2:1706/141‑1 (MQ=255)
                                                                 ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACAATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGt                                                                          >  2:1133794/1‑141 (MQ=255)
                                                                   aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTc                                                                        <  1:454045/141‑1 (MQ=255)
                                                                    tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa                                                                       <  1:632315/141‑1 (MQ=255)
                                                                    tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa                                                                       >  2:1186588/1‑141 (MQ=255)
                                                                       aaaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATaa                                                                    <  1:666325/141‑1 (MQ=255)
                                                                         aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATc                                                                  >  2:1173816/1‑141 (MQ=255)
                                                                         aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATCATGATTGTTTCATTTTTTGAATAAGTTCATAATc                                                                  >  1:96931/1‑141 (MQ=255)
                                                                           acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg                                                                >  2:520564/1‑141 (MQ=255)
                                                                               gATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtgt                                                            >  1:1095291/1‑141 (MQ=255)
                                                                               gATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtgt                                                            >  1:612700/1‑141 (MQ=255)
                                                                                   cTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCa                                                        >  1:151285/1‑141 (MQ=255)
                                                                                    ttCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCAt                                                       <  1:261965/141‑1 (MQ=255)
                                                                                        tttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACaa                                                   >  2:134078/1‑141 (MQ=255)
                                                                                          tCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAg                                                 <  1:757709/141‑1 (MQ=255)
                                                                                           cAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGt                                                <  1:1092452/141‑1 (MQ=255)
                                                                                             aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGttt                                              >  1:707332/1‑141 (MQ=255)
                                                                                              tGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGtttt                                             <  1:35147/141‑1 (MQ=255)
                                                                                              tGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGtttt                                             >  1:1054230/1‑141 (MQ=255)
                                                                                                aaCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGtttttt                                           <  1:525050/141‑1 (MQ=255)
                                                                                                 aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTg                                          >  1:904328/1‑141 (MQ=255)
                                                                                                   gCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTCGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGAt                                        >  2:259291/1‑141 (MQ=255)
                                                                                                     aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTTTGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTg                                      >  1:919495/1‑141 (MQ=255)
                                                                                                     aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTg                                      <  1:1137473/141‑1 (MQ=255)
                                                                                                      ttAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGt                                     <  2:279754/141‑1 (MQ=255)
                                                                                                      ttAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGt                                     <  2:332813/141‑1 (MQ=255)
                                                                                                               aaataaaCACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTa                            >  1:718223/1‑141 (MQ=255)
                                                                                                                 ataaaCACCTCACCATAAGAAAGGAGTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAGTGTTTGATTTTTTGAATAAGTGCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACa                          >  2:806178/1‑141 (MQ=255)
                                                                                                                 ataaaCACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACa                          >  1:1026391/1‑141 (MQ=255)
                                                                                                                    atcacCTCACCATAAGAAAGGACTACTTTCTTTTGTGATGTGTTTATTTGTCGACAACTTGATTTTGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACACAGTTTTTTGATTGTCATATGTTACAAAc                       <  2:976563/139‑1 (MQ=255)
                                                                                                                    aaCACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTTATTAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAAc                       >  2:548738/1‑141 (MQ=255)
                                                                                                                    aaCACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAAc                       >  2:260675/1‑141 (MQ=255)
                                                                                                                      cacCTCACAAAAGAAAGTAGTCCTTTCTTATGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTTTTTTTCTTATGTTACAAACCCa                    >  2:787308/1‑141 (MQ=25)
                                                                                                                       acCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCa                    >  1:28958/1‑141 (MQ=255)
                                                                                                                            aCCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAGCCCAGGCtt               <  1:909396/141‑1 (MQ=255)
                                                                                                                            aCCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCtg               <  2:564494/141‑2 (MQ=255)
                                                                                                                             ccATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCttt              >  1:910361/1‑141 (MQ=255)
                                                                                                                              caaaaGAAAGTAGTACTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTAAAAACTCAGGCttt              >  2:857165/4‑141 (MQ=38)
                                                                                                                              cATAAGAAAGGACTTCTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTg             <  1:858971/141‑1 (MQ=255)
                                                                                                                              cATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTTTTTTTTTTTTTAATCAGGTGTAGCATACAAAGTTTTTTGATAGCCTTTTTTTACAACTCCAGACtttt             >  2:945849/1‑140 (MQ=255)
                                                                                                                              cATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTg             >  2:1042217/1‑141 (MQ=255)
                                                                                                                               aaaaGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTg             >  2:353283/3‑141 (MQ=38)
                                                                                                                                   gAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCt        <  2:673901/141‑1 (MQ=255)
                                                                                                                                    aaaGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTg       >  1:1191997/1‑141 (MQ=255)
                                                                                                                                     aaGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGa      >  2:1042844/1‑141 (MQ=255)
                                                                                                                                        gACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGTTTGTCATATGTTACAAACCCAGGCTTTGCACCTGATgg   >  2:1181645/1‑141 (MQ=255)
                                                                                                                                        gACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATgg   <  1:431253/141‑1 (MQ=255)
                                                                                                                                         actactTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTTTCATATGTTACAAACCCAGGCTTTGCACCTGATGGt  >  2:1065734/1‑141 (MQ=255)
                                                                                                                                          |                                                                                                                                            
TTAGCATTTTAGTTTCACTCATTTTTAAAATCACAAAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTTTTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAGTTTTTTGATTGTCATATGTTACAAACCCAGGCTTTGCACCTGATGGT  >  CP000730/1218594‑1218871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: