Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 1,931,599 A→T 6.6% L1217I (TTA→ATA)  USA300HOU_1798 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,931,5990AT 6.6% 285.1 / 7.7 86L1217I (TTA→ATA) USA300HOU_1798hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (41/39);  new base T (3/3);  total (44/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTCATTCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCTTTAC  >  CP000730/1931459‑1931739
                                                                                                                                            |                                                                                                                                            
gTCATTCTTAATTATTTTCTTATTATATTTGCCATCGTCCTAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTtaa                                                                                                                                              <  1:883444/141‑1 (MQ=255)
gTCATTCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCCCCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTtaa                                                                                                                                              <  2:242053/141‑1 (MQ=255)
gTCATTCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAATTTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTtaa                                                                                                                                              >  1:918890/1‑141 (MQ=255)
 tCATTCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTtaat                                                                                                                                             <  1:296099/141‑1 (MQ=255)
 tCATTCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTtaat                                                                                                                                             <  1:95173/141‑1 (MQ=255)
   aTTCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTtaataa                                                                                                                                           <  1:102651/141‑1 (MQ=255)
     tCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAAc                                                                                                                                         <  2:565941/141‑1 (MQ=255)
     tCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAAc                                                                                                                                         <  1:688286/141‑1 (MQ=255)
     tCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAAc                                                                                                                                         <  2:958139/141‑1 (MQ=255)
      cTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGCAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTATTAAAct                                                                                                                                        <  1:718177/141‑1 (MQ=255)
      cTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGCGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAAct                                                                                                                                        <  1:686114/141‑1 (MQ=255)
      cTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTATTAAAct                                                                                                                                        <  2:169822/141‑1 (MQ=255)
        tAATTATTTTCTTTTTATATTTGCCATCGTAATAAAAAACATTGTACCATCATTCTTGTCTATCTCGAAGAGAAATTTTTTATAGTTATATTTTTTATCCAATAGACAATTATTTAGTATTAAGAAAGTTTATTAAActtt                                                                                                                                      <  2:587167/141‑1 (MQ=255)
         aaTTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAActttc                                                                                                                                     <  2:794296/141‑1 (MQ=255)
            tattTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAActttcttt                                                                                                                                  >  1:532511/1‑141 (MQ=255)
               tttCTTTTTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCtttttt                                                                                                                               <  2:1124593/141‑1 (MQ=255)
                ttCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTACTTTTTta                                                                                                                              >  2:996945/1‑141 (MQ=255)
                        atatTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTaa                                                                                                                      >  2:882229/1‑141 (MQ=255)
                         tatTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTaaa                                                                                                                     <  2:445581/141‑1 (MQ=255)
                           tttGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAAca                                                                                                                   <  2:532511/141‑1 (MQ=255)
                               ccATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAAcattca                                                                                                               >  1:238720/1‑141 (MQ=255)
                                 aTCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAAcattcatt                                                                                                             <  2:153249/141‑1 (MQ=255)
                                    gTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATc                                                                                                          >  1:1062683/1‑141 (MQ=255)
                                       ttAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCaaa                                                                                                       >  1:1133815/2‑141 (MQ=255)
                                         aaaaaaCATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTGGATATTTTTTCCATCCAATAGACAATTTTTTAGTATTATGAAAGTTTAATAAACTTTCTTTTTTAATCAGTAAACATTCATTATCAAAtt                                                                                                     >  2:344600/1‑141 (MQ=255)
                                          aaaaaCATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTc                                                                                                    >  1:182166/1‑141 (MQ=255)
                                                aTTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTaa                                                                                              <  1:962089/141‑1 (MQ=255)
                                                 ttGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAAt                                                                                             >  2:82061/1‑141 (MQ=255)
                                                  tGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAAtt                                                                                            <  2:1091705/141‑1 (MQ=255)
                                                    tACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTTTTTTTTTTACATTCATTATCAAATTCGAGTAATTTa                                                                                          >  2:289571/1‑141 (MQ=255)
                                                        accaTTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAAt                                                                                      >  1:179701/1‑141 (MQ=255)
                                                         ccaTTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAAtt                                                                                     <  1:709786/141‑1 (MQ=255)
                                                         ccaTTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAAtt                                                                                     >  1:776143/1‑141 (MQ=255)
                                                             tCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTTTTTTTTTTTTACAATATATGAGTATTAAGAAAGTTTTATTACATTTCTTTTTTAATAAGTAGTCATTCTTTATCAAATTCCAGTaatttataatttatt                                                                                 >  2:9542/1‑140 (MQ=255)
                                                             tCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGGTTAATAAAATTTATTTTTTAATAAGTAAACATTTATTATCAAATTCGAGTATTTTAGAATTAATa                                                                                 >  2:240285/1‑141 (MQ=255)
                                                               ttGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACa                                                                               <  1:390284/141‑1 (MQ=255)
                                                                tGTCTATCTCGAAGAGAAATTTTTTCTAGATATCTTTTCCATCCAACAGACAATTTTTTAGTATTAAGAAAGTCTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCATATTCGAGTAGTTTAGAATTAATACat                                                                              <  2:539610/141‑1 (MQ=255)
                                                                tGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACat                                                                              <  2:877117/141‑1 (MQ=255)
                                                                tGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACat                                                                              <  1:910207/141‑1 (MQ=255)
                                                                 gTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACata                                                                             <  2:311731/141‑1 (MQ=255)
                                                                  tCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACatat                                                                            <  2:518002/141‑1 (MQ=255)
                                                                        tcGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTc                                                                      >  2:621903/1‑141 (MQ=255)
                                                                         cGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCa                                                                     <  2:166285/141‑1 (MQ=255)
                                                                         cGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCa                                                                     <  2:174297/141‑1 (MQ=255)
                                                                             gagaAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCaa                                                                 >  1:57957/1‑141 (MQ=255)
                                                                             gagaAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCaa                                                                 >  1:322029/1‑141 (MQ=255)
                                                                              agaAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCaaa                                                                <  2:292021/141‑1 (MQ=255)
                                                                               gaAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAAt                                                               <  2:25978/141‑1 (MQ=255)
                                                                                aaaTTTTTTCTAGATCTATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAAtt                                                              <  1:991453/141‑1 (MQ=255)
                                                                                aaaTTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAAtt                                                              <  2:942560/141‑1 (MQ=255)
                                                                                aaaTTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAAtt                                                              <  1:169719/141‑1 (MQ=255)
                                                                                    ttttttttttttttttttCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGt                                                          >  2:852730/15‑141 (MQ=255)
                                                                                      tttCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGttt                                                        <  2:142439/141‑1 (MQ=255)
                                                                                         cTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTcc                                                     <  1:844698/141‑1 (MQ=255)
                                                                                                 atTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCct                                             <  1:601813/141‑1 (MQ=255)
                                                                                                  ttttCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCATATTTAGTTTTCGATACTCctt                                            >  1:31114/1‑141 (MQ=255)
                                                                                                  ttttCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCctt                                            >  1:31041/1‑141 (MQ=255)
                                                                                                  ttttCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCctt                                            <  2:611557/141‑1 (MQ=255)
                                                                                                  ttttCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCctt                                            <  1:754723/141‑1 (MQ=255)
                                                                                                    ttCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCcttct                                          >  1:287623/1‑141 (MQ=255)
                                                                                                      ccatccaATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCttcttc                                        >  1:641583/1‑141 (MQ=255)
                                                                                                      ccatccaATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCttcttc                                        >  2:103123/1‑141 (MQ=255)
                                                                                                       catccaATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGtttt                                                       >  2:603639/1‑125 (MQ=255)
                                                                                                       catccaATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGtttt                                                       <  1:603639/125‑1 (MQ=255)
                                                                                                         tccaATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGt                                     >  1:673239/1‑141 (MQ=255)
                                                                                                         tccaATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGt                                     <  2:1161436/141‑1 (MQ=255)
                                                                                                             aTAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGt                                 >  1:631898/1‑141 (MQ=255)
                                                                                                             aTAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGt                                 >  1:1178410/1‑141 (MQ=255)
                                                                                                             aTAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGt                                 <  1:234170/141‑1 (MQ=255)
                                                                                                                 aCAATTTTTTTTTTTTTTTAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTa                             >  2:1150795/1‑141 (MQ=255)
                                                                                                                 aCAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTAATTATCAAATTCGAGTAATTTAGAATTAATACATATTTTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCTTTTGTATTa                             >  2:697603/1‑141 (MQ=255)
                                                                                                                  cAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTaa                            >  2:169595/1‑141 (MQ=255)
                                                                                                                  cAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTaa                            >  1:197949/1‑141 (MQ=255)
                                                                                                                   aaTTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAAt                           <  1:695558/141‑1 (MQ=255)
                                                                                                                   aaTTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAAt                           >  1:1100952/1‑141 (MQ=255)
                                                                                                                    aTTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATCCTCCTTCTTCCGtaaaaaaaaaaa                          <  2:1022910/141‑12 (MQ=255)
                                                                                                                    aTTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATg                          <  1:441913/141‑1 (MQ=255)
                                                                                                                     ttttttAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGa                         <  1:412727/141‑1 (MQ=255)
                                                                                                                     ttttttAGTATTAAGAAAGATTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGa                         >  1:133046/1‑141 (MQ=255)
                                                                                                                          tAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGATTTAATACATGTTGTTTCTCCAATTTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAaat                    >  1:47966/1‑141 (MQ=255)
                                                                                                                           aGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAaata                   >  1:1139396/1‑141 (MQ=255)
                                                                                                                            gTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAaataa                  >  2:81272/1‑141 (MQ=255)
                                                                                                                             tATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATAAATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAaataat                 >  1:621587/1‑141 (MQ=255)
                                                                                                                                 aaGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATctac             <  2:197949/141‑1 (MQ=255)
                                                                                                                                     aaGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTAtt         >  1:598404/1‑141 (MQ=255)
                                                                                                                                     aaGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTAtt         >  1:687725/1‑141 (MQ=255)
                                                                                                                                      aGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTAttt        >  2:162241/1‑141 (MQ=255)
                                                                                                                                       gTTTATTAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTAtttt       >  2:188136/1‑140 (MQ=255)
                                                                                                                                       gTTTATTAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTc       >  1:876554/1‑141 (MQ=255)
                                                                                                                                        tttATTAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCt      >  2:330561/1‑141 (MQ=255)
                                                                                                                                        tttAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCt      <  2:29422/141‑1 (MQ=255)
                                                                                                                                         ttAAAAAACTTTCTTTTTTAAAAAGTAAAAATTCATTATTATATTCGAGTTTTTTATTATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAATTAATCTACTATTTCtt     >  2:1020701/1‑141 (MQ=255)
                                                                                                                                           aataaACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCTTTa   >  1:982766/1‑141 (MQ=255)
                                                                                                                                           aataaACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTAAATACTCCTTATTCCGTTTGTATTAATGAAAAATAATATACTATTTCTTTa   >  1:1133872/1‑141 (MQ=255)
                                                                                                                                            ataaACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCTTTac  >  1:697908/1‑141 (MQ=255)
                                                                                                                                            ataaACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCTTTac  >  2:568233/1‑141 (MQ=255)
                                                                                                                                            ataaACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCTTTac  >  2:385013/1‑141 (MQ=255)
                                                                                                                                            ataaACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCTTTac  >  2:223872/1‑141 (MQ=255)
                                                                                                                                            ataaACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTCTCCATACTGCTTCTTCCGATTGAATTAATGAACAATAATCTACTAGTTCTTTac  >  2:327459/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
GTCATTCTTAATTATTTTCTTATTATATTTGCCATCGTCATAAAAAACATTGTACCACCATTCTTGTCTATCTCGAAGAGAAATTTTTTCTAGATATATTTTCCATCCAATAGACAATTTTTTAGTATTAAGAAAGTTTAATAAACTTTCTTTTTTAATAAGTAAACATTCATTATCAAATTCGAGTAATTTAGAATTAATACATATTGTTTCACCAAATTTAGTTTTCCATACTCCTTCTTCCGTTTGTATTAATGAAAAATAATCTACTATTTCTTTAC  >  CP000730/1931459‑1931739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑