| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,283,586 | A→T | 5.3% | intergenic (+5254/+2778) | mtlD → / ← glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,283,586 | 0 | A | T | 5.3% | 386.5 / 2.2 | 122 | intergenic (+5254/+2778) | mtlD/glmM | mannitol‑1‑phosphate 5‑dehydrogenase/phosphoglucosamine mutase |
| Reads supporting (aligned to +/- strand): ref base A (44/68); new base T (7/2); total (52/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.47e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 124 total aligned reads displayed.
TGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTCAATAGCTTCCGCTACTTCT > CP000730/2283449‑2283724 | tGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTATGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTagag > 1:452190/1‑141 (MQ=255) gAGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTGACTTCATTATAGGCATCCATTTTTGGTTGCGTAGAGACGGTac > 1:588926/1‑140 (MQ=255) gAGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTaa < 1:718520/141‑1 (MQ=255) gAGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTaa > 2:505480/1‑141 (MQ=255) aGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAat > 1:1015966/1‑141 (MQ=255) aGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAat < 2:856911/141‑1 (MQ=255) gCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTTTTTGCGTTTTTTCAGTAATAttt > 2:192568/1‑141 (MQ=255) gCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATAttt > 2:845293/1‑141 (MQ=255) gCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATGTGGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATAttt < 1:621539/141‑1 (MQ=255) cATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATAtttt < 2:949121/141‑1 (MQ=255) cATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATAtttt > 2:447583/1‑141 (MQ=255) cATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATAtttt < 1:1078413/141‑1 (MQ=255) aTCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGACACTGTTGCATTTTCAGCTTTACTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTc < 1:596694/141‑1 (MQ=255) aTCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTc < 1:875518/141‑1 (MQ=255) aTCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTc < 2:1159425/141‑1 (MQ=255) aTCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTc < 2:937747/141‑1 (MQ=255) aTCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTc < 1:980351/141‑1 (MQ=255) aTCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTc < 1:954335/141‑1 (MQ=255) aCTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAAtt > 1:333175/1‑141 (MQ=255) gctgcATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAAttttt > 1:833258/1‑141 (MQ=255) gcATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCGGTAATATGTTCATTTTTTggg > 2:412265/1‑139 (MQ=255) cATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTgaga < 2:755723/141‑1 (MQ=255) tCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGAtt < 1:832848/141‑1 (MQ=255) cAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGAttt > 1:790080/1‑141 (MQ=255) aGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATttc > 2:757/1‑141 (MQ=255) gCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATttct < 1:68616/141‑1 (MQ=255) cTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATttctt > 2:484816/1‑141 (MQ=255) ttCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATttcttc < 1:52598/141‑1 (MQ=255) cTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGATACAGTAATATTTTCAATTTTTGAGATTTCTTCGt > 2:23922/1‑141 (MQ=255) cTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGt > 1:869140/1‑141 (MQ=255) cTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGt > 1:226788/1‑141 (MQ=255) cTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGt > 2:23860/1‑141 (MQ=255) gCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGttt > 1:514801/1‑141 (MQ=255) cTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGtttt < 1:533810/141‑1 (MQ=255) cTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGtttt > 1:1177807/1‑141 (MQ=255) aCTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTa < 2:491335/141‑1 (MQ=255) ttcttcATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAAc < 1:785701/141‑1 (MQ=255) ttcATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAActct < 1:746613/141‑1 (MQ=255) ttcATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAActct < 1:931850/141‑1 (MQ=255) ttcATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAActct < 1:235638/141‑1 (MQ=255) cATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCttt < 2:1115224/141‑1 (MQ=255) aTTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTCGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTc > 2:559994/1‑141 (MQ=255) tttGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCt < 2:317235/141‑1 (MQ=255) ttgttgCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTa < 1:63821/141‑1 (MQ=255) cagttgCATTTGAAACTGTAGCATTTTGCGCTTTTCTAGCTGTAGCTGCTTGTCTAACTTCTTTATAAGCATCCATTTTAGTTTGTGTTGAATCCGTAATATTCTCAATTTTGAATATTTCTTCGTTTTTAACGCGTTCTa < 2:436356/139‑1 (MQ=255) tgCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATc > 2:1052805/1‑141 (MQ=255) gCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCt > 1:1135464/1‑141 (MQ=255) cATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTTGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCtt > 2:707706/1‑141 (MQ=255) aTTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTtg < 1:643218/141‑1 (MQ=255) tttGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGTTTTCTTCGTTTTTAAATCTTTCTAAATCTtgt > 2:1147319/1‑141 (MQ=255) tGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGc < 2:977887/141‑1 (MQ=255) cTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCg > 2:883858/1‑141 (MQ=255) tGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGt > 1:179377/1‑141 (MQ=255) gTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGtt > 1:822470/1‑141 (MQ=255) gTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGtt > 1:1157001/1‑141 (MQ=255) tAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTg < 1:883858/141‑1 (MQ=255) aGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGt < 1:1022331/141‑1 (MQ=255) cATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCg < 1:484816/141‑1 (MQ=255) ttttGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCt < 1:876639/141‑1 (MQ=255) ttGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTc > 1:444608/1‑141 (MQ=255) ttGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACCTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGCTGTCGCTTc < 2:537356/141‑1 (MQ=255) gAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCaa < 2:1161307/141‑1 (MQ=255) gAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCaa < 1:922039/141‑1 (MQ=255) aGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAAt < 2:105078/141‑1 (MQ=255) cTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTg < 1:893136/141‑1 (MQ=255) tAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTaa < 2:790080/141‑1 (MQ=255) tAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTaa < 2:219707/141‑1 (MQ=255) cTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAacac > 1:137414/1‑141 (MQ=255) cTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAACCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAacac < 2:1010142/141‑1 (MQ=255) tGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACAcc < 1:890999/141‑1 (MQ=255) ttGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAg < 1:526242/141‑1 (MQ=255) ttGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAg < 1:591211/141‑1 (MQ=255) tGCAGCTTGTTTCATATTATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGa < 1:664416/141‑1 (MQ=255) tGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGa > 1:305618/1‑141 (MQ=255) gCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGaa < 2:319482/141‑1 (MQ=255) tgCTTGTCTAACTTCTTTATAAGCATCCATTTTAGTTTGAGTTGAATCCGTAATATTCTCAATTTTGAATATTTCTTCGTTTTTAACGCGTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAAc < 1:878959/140‑1 (MQ=255) aGCTTGTTTAACTTCATTATAGGCATCCATTTTTTTTTTTTTTTTGTCAGTAATATTTTCAATTTTTGTGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAAc > 2:963727/1‑141 (MQ=255) aGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAAc < 1:658860/141‑1 (MQ=255) aGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAAc > 1:760925/1‑141 (MQ=255) tGTTTAACTTCATTATAGGCATCCATTTTTTTTTTTTTTTTGTCAATAATATGTGCAATTCTTGAGATTTCTGCGGTTTTAGCTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTGCTATGGTTTTTACACCAAAAACTTTa > 2:202493/1‑141 (MQ=255) ttttAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCGATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCTGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAg < 2:373541/140‑1 (MQ=255) tttAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGc < 1:869006/141‑1 (MQ=255) aCTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCa < 1:649410/141‑1 (MQ=255) cTTCATTATAGGCATCCATTTTTGTTTTCGTAGTGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAACCTTTCGCTGcct > 2:1061551/1‑139 (MQ=255) ttCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCAtt > 2:369077/1‑141 (MQ=255) cATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTaa < 1:734024/141‑1 (MQ=255) cATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTaa < 1:361014/141‑1 (MQ=255) cATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTCCAATTTTTGATATTTCCTCGTCTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTaa < 1:893912/141‑1 (MQ=255) aTTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATttctt < 1:355323/62‑1 (MQ=255) aTTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAAGATTTTCAATTTTTGAGATttctt > 2:355323/1‑62 (MQ=255) aGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGtt < 2:2976/141‑1 (MQ=255) ggCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTc > 2:750388/1‑141 (MQ=255) ggCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTc > 1:153355/1‑141 (MQ=255) aTCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAACCTTTAGCTGCATTAATACGTTCAAt < 2:6690/141‑1 (MQ=255) aTCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTCAAt < 1:1095041/141‑1 (MQ=255) tgtttgCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTCAATAGCTTCCGc > 1:490922/1‑141 (MQ=255) tttgCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTCAATAGCTTCCGCTa < 2:284512/141‑1 (MQ=255) tgCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTCAATAGCTTCCGCTAct < 2:833258/141‑1 (MQ=255) cGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTCAATAGCTTCCGCTActtc < 1:119309/141‑1 (MQ=255) gTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTGAACACCAGAAACTTTAGCTGCATTAATACGTTCAATAGCTTCCGCTActtct < 2:1007826/141‑1 (MQ=255) | TGCTTTTGAGCTGCATCTACTGCTGCATCAGCTTCTGCTACTTCTTCATTTGTTGCATTTGAAACTGTAGCATTTTGAGCTTTTCTAGCTGTTGCAGCTTGTTTAACTTCATTATAGGCATCCATTTTTGTTTGCGTAGAGTCAGTAATATTTTCAATTTTTGAGATTTCTTCGTTTTTAACTCTTTCTAAATCTTGTGCAGTCGTTGTCGCTTCAATTGCTTTAACACCAGAAACTTTAGCTGCATTAATACGTTCAATAGCTTCCGCTACTTCT > CP000730/2283449‑2283724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |