| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 2,444,869 | T→A | 5.7% | L15F (TTA→TTT) | USA300HOU_2306 ← | NhaC family sodium:proton (Na+:H) antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 2,444,869 | 0 | T | A | 5.7% | 374.7 / 3.4 | 113 | L15F (TTA→TTT) | USA300HOU_2306 | NhaC family sodium:proton (Na+:H) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (47/57); new base A (2/6); total (50/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 115 total aligned reads displayed.
ACATTTAATGGCATTGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTCCCTCCACCTCTC > CP000730/2444732‑2445009 | aCATTTGATGGCATTGAAGTAAAGTCGCCTGTGATAATAGCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTaaa < 1:1056952/141‑1 (MQ=255)aCATTTAATGGCATTGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTaaa > 2:286545/1‑141 (MQ=255) cATTTAATGGCATTGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCTCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTaaaa > 2:587220/1‑141 (MQ=255) cATTTAATGGCATTGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTaaaa < 2:918438/141‑1 (MQ=255) gCATTGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCtt < 1:12457/141‑1 (MQ=255) cATTGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCATTTAAAAATACCTCttt < 2:1030062/141‑1 (MQ=255) cATTGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCttt < 2:1030063/141‑1 (MQ=255) ttGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTtct < 2:622054/141‑1 (MQ=255) aaGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTcac > 1:1067606/1‑141 (MQ=255) aGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTcaca > 1:502684/1‑141 (MQ=255) aaaaTCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAAc < 1:1172666/141‑1 (MQ=255) aaaTCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATAAAAAATACCTCTTTCTCACAAACg > 1:527023/1‑141 (MQ=255) aaaTCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATAAAAAATACCTCTTTCTCACAAACg > 1:527039/1‑141 (MQ=255) aaTCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGa > 2:403076/1‑141 (MQ=255) cACCTGTGATAATAGCTACGCCTAAAAACAACGCCACAAATAGTAACAAGGGGAATAATACCCAAGCAGTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGAAATACAAAAAAAAATACCTCTTTCTCACAAACGATga < 2:760296/141‑1 (MQ=255) ccTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATgaag > 1:1134359/1‑141 (MQ=255) cTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATgaaga > 1:97501/1‑141 (MQ=255) tgtgATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATgaagaa < 2:253187/141‑1 (MQ=255) gtgATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGaagaaa > 2:656483/1‑141 (MQ=255) tgATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGaagaaag > 2:503840/1‑141 (MQ=255) gATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGaagaaaga > 1:1061015/1‑141 (MQ=255) gATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCCTTCTCACAAACGATGaagaaaga < 1:209202/141‑1 (MQ=255) taataCCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAgg < 2:773824/141‑1 (MQ=255) ataCCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGtt < 1:1113104/141‑1 (MQ=255) tACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAt < 2:370068/141‑1 (MQ=255) tACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAt < 1:206470/141‑1 (MQ=255) cGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCAtgt < 1:1108810/141‑1 (MQ=255) ccTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGc < 2:362083/141‑1 (MQ=255) ccTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGc < 1:476263/141‑1 (MQ=255) ccTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATAAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGc < 2:527023/141‑1 (MQ=255) ccTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATAAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGc < 2:527039/141‑1 (MQ=255) tAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCtt < 2:329061/141‑1 (MQ=255) tAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCtt < 1:1107111/141‑1 (MQ=255) aacaacGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCCCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGATGTTTTCATGTGATTTccc > 2:711838/1‑141 (MQ=255) acaacGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCt < 1:1083097/141‑1 (MQ=255) caacGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTg < 2:316222/141‑1 (MQ=255) gCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTa > 1:319105/1‑141 (MQ=255) gCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATGAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTa > 1:49699/1‑141 (MQ=255) ccACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTAt > 2:209873/1‑141 (MQ=255) acaAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCt > 2:157045/1‑141 (MQ=255) acaAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCt < 1:564098/141‑1 (MQ=255) ataataACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCAAAACAAAAAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCaa < 2:922202/141‑1 (MQ=255) taataaCGATGTGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTGCCAATTAAAAATACCTCTTTCTCACAAGCGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCaaa < 1:1070910/141‑1 (MQ=255) taataaCAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCaaa > 2:200601/1‑141 (MQ=255) aataaCAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAAc > 1:1076842/1‑141 (MQ=255) ataaCAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAAcc > 1:330625/1‑141 (MQ=255) taaCAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAGGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCa > 1:489083/1‑141 (MQ=255) taaCAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCa > 1:238856/1‑141 (MQ=255) aaCAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCAt > 1:784260/1‑141 (MQ=255) aaCAAGGGGAATAATGCCCAAGCACTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCAt > 1:569437/1‑141 (MQ=255) ggggAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACgg > 1:173948/1‑141 (MQ=255) ggAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCAAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGtt < 2:1179718/141‑1 (MQ=255) gAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTa < 1:311926/141‑1 (MQ=255) gAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTa < 2:736344/141‑1 (MQ=255) gAATAATGCCCAAGCATTGCTCTTGTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTa < 1:611499/141‑1 (MQ=255) gcaatgcttgggCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTAAATTCAAACCATTACGGTTACt > 1:9786/12‑141 (MQ=255) ataatGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACt > 1:288290/1‑141 (MQ=255) ccAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTg > 1:157247/1‑141 (MQ=255) cAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTgg < 2:1134359/141‑1 (MQ=255) aGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGca < 2:837029/141‑1 (MQ=255) aGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGca < 2:55410/141‑1 (MQ=255) gCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGcac < 1:589889/141‑1 (MQ=255) gCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGcac > 1:1058101/1‑141 (MQ=255) gCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGcac > 2:184214/1‑141 (MQ=255) gCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGcac < 1:275786/141‑1 (MQ=255) gCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCg < 2:265010/141‑1 (MQ=255) ctTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCgaga > 1:695551/1‑141 (MQ=255) ctTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCgaga < 1:425239/141‑1 (MQ=255) atttttATGTACTTCCATCCTTTTTACCGGCTTTCCAATTAGAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCgaga < 2:26343/140‑1 (MQ=255) ttttATGTGCTTCCATCCTTTTTACCTGAAATAAAAAAAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATg < 2:307918/141‑1 (MQ=255) ttttATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATg < 2:742207/141‑1 (MQ=255) ttATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGtt > 1:172470/1‑141 (MQ=255) tGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGcc < 2:238639/141‑1 (MQ=255) tGTACTGCCATCCTTTCTACCTGCTTTCCAAGTAAAAATACCTCTTTCTCACGAACGATGCAGAAAGAGGTTTTCATGTGCGTTACCTGATTATCTTCTAACCATTACGGTTACTGTGATTGGCTCATTCGAGATGTTGcc < 2:144962/141‑1 (MQ=255) aCTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAg > 2:1172582/1‑141 (MQ=255) cTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAgg < 2:1067606/141‑1 (MQ=255) tCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCAt > 2:901577/1‑141 (MQ=255) tCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCAt > 2:1064945/1‑141 (MQ=255) ttttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAggg > 2:628992/1‑141 (MQ=255) ttttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAggg > 1:953857/1‑141 (MQ=255) tttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGc < 2:152124/141‑1 (MQ=255) ttattttttttCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGcc > 2:670190/9‑141 (MQ=255) ttACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGcc < 2:266125/141‑1 (MQ=255) ttACCTGCTTGCCGAGTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGcc < 2:317148/141‑1 (MQ=255) tACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGACa > 2:601657/1‑141 (MQ=255) aCCTTCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAg < 2:863382/141‑1 (MQ=255) aCCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAg > 2:468429/1‑141 (MQ=255) aCCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAg < 1:908217/141‑1 (MQ=255) ccTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGt > 2:1163664/1‑141 (MQ=255) ccTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGCTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGGGATGTTGCCGAGGCTTCATAGGGCCAGt > 2:900586/1‑141 (MQ=255) cTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTc > 1:124574/1‑141 (MQ=255) gCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTccc > 2:683882/1‑141 (MQ=255) gCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTccc > 1:33551/1‑141 (MQ=255) ccAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTCCCTCCAc > 2:1161816/1‑141 (MQ=255) aaTTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTc < 2:477982/69‑1 (MQ=255) aaTTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTc > 1:477982/1‑69 (MQ=255) aTTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTCCCTCCACctc < 2:269810/141‑1 (MQ=255) aTTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTCCCTCCACctc > 2:662554/1‑141 (MQ=255) ttAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTCCCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTCCCTCCACctct > 2:774013/1‑141 (MQ=255) tAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTCCCTCCACctctc > 2:1042991/1‑141 (MQ=255) | ACATTTAATGGCATTGAAGTAAAATCACCTGTGATAATACCTACGCCTAAAAACAACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTCACAAACGATGAAGAAAGAGGTTTTCATGTGCTTTACCTGCTTATCTTCAAACCATTACGGTTACTGGAATTGGCACATTCGAGATGTTGCCGAGGCTTCATAGGGCCAGTCCCTCCACCTCTC > CP000730/2444732‑2445009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |