| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 14186 | 45 (1.080) | 4 (0.100) | 4/240 | NT | 8.5% | intergenic (+87/‑563) | serS/azlC | serine‑‑tRNA ligase/LIV‑E family branched chain amino acid exporter |
| ? | CP000730 | = 14200 | 44 (1.140) | intergenic (+101/‑549) | serS/azlC | serine‑‑tRNA ligase/LIV‑E family branched chain amino acid exporter | |||||
TCCAGAAGCATTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/14039‑14186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagtggCGACAGCTTCGTCACCACTTTTTAAAATATTATTTAAAGTATCTTGCCCTTGCTTTAAGTATACGTAGATATATACTTTTTAAAGCTTGTAGCTAAAGCCTTTATTTAACTGGTTTTGAAATTTGTGTTTTACCACCCA < CP000730/14200‑14062 TCCAGAAGCATTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAA > 2:316650/1‑141 CAGAAGCATTAGTACCATTTATGGGTGTTAAAACATNAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAca > 1:50234/1‑139 CAGAAGCATTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAA > 1:303264/1‑141 GAAGCATTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAG > 1:146163/1‑141 GAAGCATTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAG < 1:194469/141‑1 agtATTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTG < 2:435148/138‑1 GCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGCGACAGCTTCGTCACC > 1:308186/1‑95 GCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGCGACAGCTTCGTCACC < 2:308186/95‑1 AGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGCGACAGCTTCGTCACCACTTTT < 2:99029/85‑1 AGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGGCGACAGCTTCGTCACCACTTTT > 1:99029/1‑85 GTGGCGACAGCTTCGTCACCACTTGTTAAAATATTATGTAAAGTATCTTGCCCTTGCTTTAAGTATACGTAGATATATACTTTTTAAAGCTTGTAGCTAAAGCCTTTATTTAACTGGTTTTGAAATTTGTGTTTTACCACC < 2:210981/141‑1 GGCGACAGCTTCGTCACCACTTTTTAAAATATTATTTAAAGTATCTTGCCCTTGCTTTAAGTATACGTAGATATATACTTTTTAAAGCTTGTAGCTAAAGCCTTTATTTAACTGGTTTTGAAATTTGTGTTTTACCACCCA < 1:338800/141‑1 GGCGACAGCTTCGTCACCACTTTTTAAAATATTATTTAAAGTATCTTGCCCTTGCTTTAAGTATACGTAGATATATACTTTTTAAAGCTTGTAGCTAAAGCCTTTATTTAACTGGTTTTGAAATTTGTGTTTTACCACCCA > 1:61861/1‑141 TCCAGAAGCATTAGTACCATTTATGGGTGGTAAAACACAAATTTCAAAACCAGTTAAATAAAGGCTTTAGCTACAAGCTTTAAAAAGTATATATCTACGTATACTTAAAGCAAGGGCAAGATACTTTAAATAATATTTTAAAAAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/14039‑14186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagtggCGACAGCTTCGTCACCACTTTTTAAAATATTATTTAAAGTATCTTGCCCTTGCTTTAAGTATACGTAGATATATACTTTTTAAAGCTTGTAGCTAAAGCCTTTATTTAACTGGTTTTGAAATTTGTGTTTTACCACCCA < CP000730/14200‑14062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |