New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1009804 =	45 (1.080)	3 (0.080)	3/238	NT	6.9%	coding (82/855 nt)	rluA1	pseudouridylate synthase
	?	CP000730	1009828 =	40 (1.040)					coding (106/855 nt)	rluA1	pseudouridylate synthase

TACTTCTAGCTTACGAGCATAAGGTATTAAATTAACACTCGGTATTTCTCGCGGTAAATGAATTTCTAATATATCATTTGTCATTAATTGCTTACGCACTGTGACTGGTTCATCATTAACAATTAAAGCGCCATTATTTTTAATGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1009953‑1009804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatggcgctTTAATTGTTAATGATGAACCAGTCACAGTGCGTAAGCAATTAATGACAAATGATATATTAGAAATTCATTTACCGCGAGAAATACCGAGTGTTAATTTAATACCTTATGCTCGTAAGCTAGAAGTATTGTATG  >  CP000730/1009828‑1009960                                                                                                                                                                                                                                                                                             TACTTCTAGCCTACGAGCATAAGGTATTAAATTAACACTCGGTATTTCTCGCGGTAAATGAATTTCTAATATATCATTTGTCATTAATTGCTTACTCACTGTGACTGGTTCATCATTAACAATTAAATCGCCATTATTTTT                                                                                                                                                >  2:183091/1‑141     TCTAGCTTACGAGCATAAGGTATTAAATTAACACTCGGTATTTCTCGCGGTAAATGAATTTCTAATATATCATTTGTCATTAATTGCTTACGCACTGTGACTGGTTCATCATTAACAATTAAAGCGCCATTATTTTTAATG                                                                                                                                            >  1:460580/1‑141                                                              ATTTCTAATATATCATTTGTCATTAATTGCTTACGCACTGTGACTGGTTCATCATTAACAATTAAAGCGCCATTAAAAATAATGGCGCTTTAATTGT                                                                                                                               <  1:341333/97‑1                                                              ATTTCTAATATATCATTTGTCATTAATTGCTTACGCACTGTGACTGGTTCATCATTAACAATTAAAGCGCCATTAAAAATAATGGCGCTTTAATTGT                                                                                                                               >  2:341333/1‑97                                                                                                                                 CGCCATTATTTTTAATGGCGCTTTAATTGTTAATGATGAACCAGTCACAGTGCGTAAGCAATTAATGACAAATGATATATTAGAAATTCATTTACCGCGAGAAATACCGAGTGTTAATTTAATACCTTATGCTCGTAAGCT                >  1:331995/1‑141                                                                                                                                               ATGGCGCTTTAATTGTTAATGATGAACCAGTCACAGTGCGTAAGCAATTAATGACAAATGATATATTAGAAATTCATTTACCGCGAGAAATACCGAGTGTTAATTTAATACCTTATGCTCGTAAGCTAGAAGTATTGTATG  <  1:81964/141‑1                                                                                                                                               ATGGCGCTTTAATTGTTAATGATGAACCAGTCACAGTGCGTAAGCAATTAATGACAAATGATATATTAGAAATTCATTTACCGCGAGAAATACCGAGTGTTAATTTAATACCTTATGCTCGTAAGCTAGAAGTATTGTATG  >  2:434147/1‑141                                                                                                                                                                                                                                                                                             TACTTCTAGCTTACGAGCATAAGGTATTAAATTAACACTCGGTATTTCTCGCGGTAAATGAATTTCTAATATATCATTTGTCATTAATTGCTTACGCACTGTGACTGGTTCATCATTAACAATTAAAGCGCCATTATTTTTAATGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1009953‑1009804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatggcgctTTAATTGTTAATGATGAACCAGTCACAGTGCGTAAGCAATTAATGACAAATGATATATTAGAAATTCATTTACCGCGAGAAATACCGAGTGTTAATTTAATACCTTATGCTCGTAAGCTAGAAGTATTGTATG  >  CP000730/1009828‑1009960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.