New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1929987 =	30 (0.720)	3 (0.080)	3/232	NT	10.0%	intergenic (‑1070/‑98)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
	?	CP000730	1930020 =	27 (0.720)					intergenic (‑1103/‑65)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein

TGACATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGGGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1930134‑1929987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagtgaggggattGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAGGCTCTATGTCAAATTGGACTGATGCGTTCAATA  >  CP000730/1930020‑1930156                                                                                                                                                                                                                                                                                               TGACATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATACCCTCACTATTTGCGGTAGTGA                                                                                                                                                  >  1:3985/1‑141  GACATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAG                                                                                                                                                 <  2:434888/141‑1  GACATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAG                                                                                                                                                 >  1:461864/1‑141   ACATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGG                                                                                                                                                >  1:233621/1‑141   ACATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGG                                                                                                                                                >  1:285852/1‑141    CATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGGG                                                                                                                                               >  2:50726/1‑141     ATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGGGG                                                                                                                                              <  1:73304/141‑1     ATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGGGG                                                                                                                                              <  1:78973/141‑1      TAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGGGGA                                                                                                                                             <  2:9782/141‑1                                       aaaaatTTGCATAAATTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACGATTCCCCTCACTACCGCAAATGGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTC                                                                                                            <  2:259078/135‑1                                                                                  TAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGT                                                                 <  1:177210/141‑1                                                                                                                                  TTGCGGTAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAGGCTCTATGTCAAATTGGA                 >  2:87093/1‑141                                                                                                                                          GTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAGGCTCTATGTCAAATTGGACTGATGCG         >  1:112953/1‑141                                                                                                                                           TGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAGGCTCTATGTCAAATTGGACTGATGCGT        <  2:379049/141‑1                                                                                                                                                 GATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACAAAAAGAAAAAAAAAAGGCTCTATGTCAAATTGGACTGATGCGTTCAATA  <  2:459836/141‑1                                                                                                                                                                                                                                                                                               TGACATAGAGCCTTTTTTAGTTCTTGATGTTTCTCTTTAAAACCTTGCATATTTTACAAAAAGAAAAATTAGCAGTATAATTAAGACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGGTAGTGAGGGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1930134‑1929987 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagtgaggggattGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATATGCAAGGTTTTAAAGAGAAACATCAAGAACTAAAAAAGGCTCTATGTCAAATTGGACTGATGCGTTCAATA  >  CP000730/1930020‑1930156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.