New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52495 =	44 (0.820)	89 (1.680) +T	5/294	4.9	60.3%	intergenic (+105/‑568)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
	?	CP000730	= 52988	74 (1.380)					intergenic (+598/‑75)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

AATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGTA  >  CP000730/52842‑53136                                                                                                                                                   |                                                                                                                                                      aaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgc                                                                                                                                                     >  1:93538/1‑149 (MQ=32)  aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg                                                                                                                                                    >  1:1083491/1‑149 (MQ=32)      tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaa                                                                                                                                                <  1:857615/149‑1 (MQ=32)        tGAAATCATCGTAGTAATCGCGCGAAAATAGCGTAGAAGAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGACAt                                                                                                                                              >  1:1109868/1‑149 (MQ=11)         gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAGATCCCCGAAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATa                                                                                                                                             <  1:538463/149‑1 (MQ=255)         gAAATCATCGGAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATa                                                                                                                                             <  1:220777/149‑1 (MQ=17)           aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGGATTGATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACt                                                                                                                                           >  1:218751/1‑149 (MQ=255)            atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATGATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTa                                                                                                                                          >  1:625443/1‑149 (MQ=21)            atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTa                                                                                                                                          >  1:500268/1‑149 (MQ=34)            atcatcGTAGTAATCGCGCGAAAAACGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTa                                                                                                                                          >  1:625500/1‑149 (MQ=25)             tcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAGTCGCGCGAAAATCGCGTGAAATACTaa                                                                                                                                         >  1:78765/1‑148 (MQ=25)                           gcgcgAAAATCGCGTGAAATAATCAGAGGGATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGa                                                                                                                          <  1:22233/149‑1 (MQ=255)                           gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGa                                                                                                                          <  1:944387/149‑1 (MQ=255)                            cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCATAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCGTCGTAGTAGTCGCGCGAAAATCGCGTGAAATACGATGGTAAACGGT‑TTggg                                                                                                                         >  1:197377/1‑147 (MQ=14)                                      gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATg                                                                                                               <  1:476182/149‑1 (MQ=255)                                      gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAACGCGAGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATg                                                                                                               <  1:729175/149‑1 (MQ=255)                                       cttGAAACAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATgg                                                                                                              <  1:1059185/147‑1 (MQ=255)                                       cggtaaataactggagGAAACGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATgg                                                                                                              <  1:277367/136‑1 (MQ=17)                                        gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGa                                                                                                             <  1:461663/149‑1 (MQ=255)                                        gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGa                                                                                                             <  1:591873/149‑1 (MQ=255)                                          gAAATCATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGt                                                                                                           <  1:904258/149‑1 (MQ=255)                                          gAAATAATCAGAGGAATCGTTTGACAGTATCGGAGTAAGCGGGGGCGGCGCTCTATAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGt                                                                                                           <  1:256642/149‑1 (MQ=17)                                             ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTAtt                                                                                                        <  1:508191/149‑1 (MQ=255)                                             ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTAtt                                                                                                        <  1:1083212/149‑1 (MQ=255)                                             ataagCAGAGGGAGCGGTGGAAAGCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTACCCGCGCTAAAAGCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTAtt                                                                                                        <  1:495826/149‑1 (MQ=18)                                              taatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTAttt                                                                                                       <  1:549429/149‑1 (MQ=255)                                              taatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGG‑TTGAGTAAATTAATGGAGTAttt                                                                                                       >  1:1000616/1‑149 (MQ=255)                                                       gAATCGTTTGAAATCCTCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTa                                                                                              <  1:785993/149‑1 (MQ=255)                                                         aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATg                                                                                            <  1:1016233/149‑1 (MQ=255)                                                                gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgga                                                                                     <  1:311361/149‑1 (MQ=255)                                                                   atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagga                                                                                  <  1:452303/149‑1 (MQ=255)                                                                    tcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                                 <  1:503726/149‑1 (MQ=255)                                                                      atcGTAGTAATCGCGCGAAAATCTCGTAAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGGAAATCGCGTGAAATACAATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTATTATTTATGGGTTGGAGGAAtt                                                                               >  1:837103/1‑149 (MQ=21)                                                                       tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTg                                                                              <  1:345385/149‑1 (MQ=255)                                                                        cggagtcATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAACTTTCCCCGTTATTTTAATATTTATGGTTTGGAGGAATTGc                                                                             <  1:547697/146‑1 (MQ=18)                                                                             taATCGCGCGAAAATCGCGTGAAATAATCAGAGTAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                        <  1:484435/149‑1 (MQ=255)                                                                                  gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                                   <  1:849755/149‑1 (MQ=255)                                                                                    ccgAAAATCGCGGGAAATAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                                 <  1:344963/148‑1 (MQ=255)                                                                                     cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaa                                                                <  1:109963/149‑1 (MQ=255)                                                                                     cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATGGCGTTGCATAGAGaa                                                                <  1:706349/149‑1 (MQ=255)                                                                                     cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAG‑CGGTATCGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaa                                                                >  1:538527/1‑149 (MQ=255)                                                                                      gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                               <  1:1076163/149‑1 (MQ=255)                                                                                       aaaaTCGCCTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                              <  1:960936/149‑1 (MQ=255)                                                                                        aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGt                                                             <  1:299502/149‑1 (MQ=255)                                                                                        aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGCAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGt                                                             <  1:209483/149‑1 (MQ=255)                                                                                        aaaTCGCGTGAAATAAACAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGt                                                             <  1:60364/149‑1 (MQ=255)                                                                                          aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑CTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaa                                                           <  1:689148/149‑1 (MQ=255)                                                                                           tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAGGTTATTGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                                          >  1:91785/1‑149 (MQ=255)                                                                                           tCGCGTGAAAGAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCTAAAATCGCGTGAAATTCGATGGTAGTCGGT‑TTGAGTAAATTTATGGATTATTTTACTATTTATGGTTTGGTGGAGTTGCGTTGCATAGAGAAAGTaaa                                                          <  1:838347/149‑1 (MQ=25)                                                                                            cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAat                                                         <  1:245004/149‑1 (MQ=255)                                                                                             gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAata                                                        >  1:720582/1‑149 (MQ=255)                                                                                               gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATGTTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatata                                                      >  1:427422/1‑149 (MQ=255)                                                                                               gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAAACGCACGGGTTAATATACATGGTGTGGAGAAATTGTGTTGAGTAGAGAAAGTAAatata                                                      >  1:259746/1‑149 (MQ=18)                                                                                                  aaaTAATCTGAGGAATCGTTTGAAATCATCGTAGTCTTCGGGCGAAAAGCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATag                                                   <  1:1044057/149‑1 (MQ=38)                                                                                                   aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATaga                                                  <  1:901678/149‑1 (MQ=255)                                                                                                              gAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAAt                                       <  1:892843/149‑1 (MQ=255)                                                                                                                 tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCTCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                                    <  1:428398/149‑1 (MQ=255)                                                                                                                 tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                                    <  1:839857/149‑1 (MQ=255)                                                                                                                 tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                                    <  1:1071423/149‑1 (MQ=255)                                                                                                                 tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                                    <  1:211574/149‑1 (MQ=255)                                                                                                                 tCGTTTGAAACCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                                    <  1:422018/149‑1 (MQ=255)                                                                                                                     ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTACATTAATGGGGTATTTTAATAATTATGGGTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAAAGTATAAGAAATTACGaaa                                >  1:467617/1‑149 (MQ=38)                                                                                                                     ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaa                                >  1:877150/1‑149 (MQ=255)                                                                                                                         aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                            <  1:450368/149‑1 (MQ=255)                                                                                                                         aaTCATCGTAGTAACTGCGCGAAAAGCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                            <  1:813420/149‑1 (MQ=255)                                                                                                                          atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTCGACGGT‑ATGAGTAAATTGAAGGGGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgtgt                           >  1:226333/1‑146 (MQ=39)                                                                                                                          atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGATTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAt                           >  1:875387/1‑149 (MQ=255)                                                                                                                          atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAt                           >  1:405799/1‑149 (MQ=255)                                                                                                                                gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTa                     <  1:803336/149‑1 (MQ=255)                                                                                                                                  agtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAAGTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAAt                   >  1:752486/1‑149 (MQ=255)                                                                                                                                         gcgcgAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAttt            <  1:449603/149‑1 (MQ=255)                                                                                                                                                aaTCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTAc     <  1:982977/149‑1 (MQ=255)                                                                                                                                                  tCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGt   <  1:555985/149‑1 (MQ=255)                                                                                                                                                   cgcgTGAAATACCATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGta  <  1:202979/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      AATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGT‑TTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTCTACGTA  >  CP000730/52842‑53136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.