New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2082519 =	77 (0.850)	5 (0.060)	5/260	11.9	6.7%	intergenic (+160/+465)	USA300HOU_1940/mapW2	aminotransferase/cell surface protein MapW2
	?	CP000730	2082566 =	68 (0.800)					intergenic (+207/+418)	USA300HOU_1940/mapW2	aminotransferase/cell surface protein MapW2
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGGCATCTCACAATCGTGGGGTGCCTTTTACATTTGTAGAGATGTGATGCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2082666‑2082519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTA  >  CP000730/2082566‑2082705                                                                                                                                                                                                                                                                                                  AAGGCATCTCACAATCGTGGGGTGCCTTTTACATTTGTAGAGATGTGATGCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGT                                                                                                                                                     <  1:844943/141‑1      ATCTCACAATCGTGGGGTGCCTTTTACATTTGTAGAGATGTGATGCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGAT                                                                                                                                                <  2:684923/141‑1        CTCACAATCGTGGGGTGCCTTTTACATTTGTAGAGATGTGATGCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT                                                                                                                                              <  2:893128/141‑1                                                                                   TATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAA                                                                   >  1:269465/1‑141                                                                                                     TAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCC                                                           >  2:4963/1‑131                                                                                                     TAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCC                                                           <  1:4963/131‑1                                                                                                                 ATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTA                                     >  1:686250/1‑141                                                                                                                                  tgttcgATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGA                    <  2:171032/135‑1                                                                                                                                            GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTC          <  1:713874/141‑1                                                                                                                                                GATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATA      <  2:448333/141‑1                                                                                                                                                GATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATA      <  1:557840/141‑1                                                                                                                                                 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATAT     >  2:62365/1‑141                                                                                                                                                 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATAT     <  1:4027/141‑1                                                                                                                                                    TATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTA  <  1:819657/141‑1                                                                                                                                                                                                                                                                                                  AAGGCATCTCACAATCGTGGGGTGCCTTTTACATTTGTAGAGATGTGATGCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2082666‑2082519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTA  >  CP000730/2082566‑2082705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.