New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1910817 =	57 (0.630)	10 (0.110)	4/268	12.9	17.4%	intergenic (+350/+1733)	sigS/ytbE	camphor resistance protein/possible aldo/keto reductase
	?	CP000730	2317562 =	40 (0.460)					intergenic (+215/+1901)	rhbC/asp23	possible Iuc family aerobactin synthesis protein/alkaline shock protein 23
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTGCC  >  CP000730/2317428‑2317700                                                                                                                                       |                                                                                                                                           cATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                                                                                      <  2:314551/141‑1 (MQ=255) cATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                                                                                      <  1:325382/141‑1 (MQ=255) cATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                                                                                      >  1:169713/1‑141 (MQ=255) cATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                                                                                      <  1:466227/141‑1 (MQ=255)  agttcgcacatacAAAGTAATAAAAAAAAAAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCt                                                                                                                                     <  2:937501/129‑1 (MQ=11)   ttttCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCtt                                                                                                                                    >  1:274533/1‑141 (MQ=255)             tCAAATTATTAAAAATCACAAAAAACAGGCTTGGACATAAATCCTTAAAAAAACAGCATTAATATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTa                                                                                                                          <  1:258456/141‑1 (MQ=255)                 attattAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGt                                                                                                                      <  1:155401/141‑1 (MQ=255)                  ttattaAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTg                                                                                                                     >  1:923619/1‑141 (MQ=255)                   tattaAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGc                                                                                                                    <  1:1008965/141‑1 (MQ=255)                     ttaAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCg                                                                                                                  >  2:129510/1‑141 (MQ=255)                     ttaAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCg                                                                                                                  >  2:40785/1‑141 (MQ=255)                           aTCACAAAAAACAGACTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAg                                                                                                            >  1:783118/1‑141 (MQ=255)                            tCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGc                                                                                                           >  1:205480/1‑141 (MQ=38)                            tCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGc                                                                                                           <  1:815948/141‑1 (MQ=38)                            tCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGc                                                                                                           >  1:205495/1‑141 (MQ=38)                              acaAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTAAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCt                                                                                                         >  2:866099/1‑141 (MQ=25)                               caAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTc                                                                                                        >  1:462868/1‑141 (MQ=35)                                 aaaaaCAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCgg                                                                                                      <  2:729123/141‑1 (MQ=32)                                 aaaaaCAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCgg                                                                                                      >  2:866043/1‑141 (MQ=33)                                 aaaaaCAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCgg                                                                                                      >  2:742813/1‑141 (MQ=33)                                     aCAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGTTTCGCTTTCCTAGGGGGCCGTCTCAGCCTCGGTCtt                                                                                                  >  1:746141/1‑141 (MQ=17)                                         gCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGAc                                                                                              >  1:353203/1‑141 (MQ=31)                                                                                                                 tATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACtttt                      <  2:169713/141‑1 (MQ=11)                                                                                                                 tATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACtttt                      <  2:240356/141‑1 (MQ=11)                                                                                                                 tATTTATACAATACTTCGTATTGAATGGCTGCGCTTTCCTAGGGTGCCGTCCCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACtttt                      <  1:831329/141‑1 (MQ=11)                                                                                                                       taCAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTaaaaaa                <  2:379504/141‑1 (MQ=32)                                                                                                                        aCAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTTATTTTACTTTTACATACTTTTAAAAAAt               >  1:44583/1‑141 (MQ=17)                                                                                                                        aCAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAAt               >  1:71285/1‑141 (MQ=32)                                                                                                                         cAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATa              <  1:444182/141‑1 (MQ=32)                                                                                                                         cAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATa              <  1:115886/141‑1 (MQ=32)                                                                                                                         cAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATa              >  2:592497/1‑141 (MQ=32)                                                                                                                         cAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATa              <  1:571800/141‑1 (MQ=32)                                                                                                                          aaTACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATaa             <  2:850744/141‑1 (MQ=32)                                                                                                                           aTACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAg            >  2:529226/1‑141 (MQ=32)                                                                                                                            tACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGa           >  1:193085/1‑141 (MQ=34)                                                                                                                            tACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGCTCTTCGACTGGCACTGCTCCCTCAGGGGGCTCGCCATTAATACTACGTATTAAGATGTATTTTTACTTTTACATACTTTTAAAAAATATGa           <  2:503252/141‑1 (MQ=11)                                                                                                                             acgaagTAGTGCATGGCTTCGCTTTCCTAGGGTGCCGTCTAAGCCTCGGTCTTAGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGCAGTAACATGTAGTTTTACTTTTACGTACTTTCAAAACATAAggc          >  2:450942/6‑139 (MQ=11)                                                                                                                                tCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACt       <  1:393637/141‑1 (MQ=34)                                                                                                                                 cGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACtt      >  2:246634/1‑141 (MQ=34)                                                                                                                                 cGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACtt      <  1:639269/141‑1 (MQ=34)                                                                                                                                   tATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTg    >  1:938965/1‑141 (MQ=34)                                                                                                                                   tATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTg    >  2:853185/1‑141 (MQ=34)                                                                                                                                   tATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTg    >  1:394101/1‑141 (MQ=34)                                                                                                                                   tATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTg    <  2:783118/141‑1 (MQ=34)                                                                                                                                     ttGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTGcc  <  1:65134/141‑1 (MQ=34)                                                                                                                                       |                                                                                                                                           CATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGACACTTTGCC  >  CP000730/2317428‑2317700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.