Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 36,378 C→T L58L (TTG→TTA)  tpn ← IS431mec transposase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073036,3780CT89.8% 2865.1 / 287.7 1286L58L (TTG→TTA) tpnIS431mec transposase
Reads supporting (aligned to +/- strand):  ref base C (63/68);  new base T (556/597);  total (620/666)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1287 total aligned reads displayed.

GCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATC  >  CP000730/36239‑36518
                                                                                                                                            |                                                                                                                                            
     cAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGTTATACGTCTCATCAATACGCCATTTGTAATAAGCTTGTTTATGCTTTTTCTTCCAAAATTGAAA‑TAAACtt                                                                                                                                        >  1:276371/1‑141 (MQ=11)
     cAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCACCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAAtt                                                                                                                                        >  1:763656/1‑141 (MQ=255)
      aaaTATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTg                                                                                                                                       >  1:1001734/1‑141 (MQ=38)
       aaTATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTgg                                                                                                                                      >  1:648538/1‑141 (MQ=38)
         tatCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTgggg                                                                                                                                    <  1:467938/141‑1 (MQ=255)
          atCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCCAATTTTATATCAAATTTggaa                                                                                                                                    <  1:774792/141‑3 (MQ=14)
            cTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCat                                                                                                                                 <  2:212424/141‑1 (MQ=38)
            cTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCat                                                                                                                                 <  1:841391/141‑1 (MQ=38)
             tAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCata                                                                                                                                >  2:690714/1‑141 (MQ=255)
             tAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCata                                                                                                                                <  1:15979/141‑1 (MQ=37)
              aaTGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTTTCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCatat                                                                                                                               >  2:1037538/1‑141 (MQ=255)
              aaTGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCGTCCAAATTTGATA‑TAAAATGGGGGCatat                                                                                                                               >  1:566688/1‑141 (MQ=11)
               atgtatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATAtt                                                                                                                              <  1:511318/141‑1 (MQ=255)
               atgtatgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATAtt                                                                                                                              >  1:89516/1‑141 (MQ=38)
                  tatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCtt                                                                                                                           <  2:898260/141‑1 (MQ=255)
                   gagtCCCTCTGCATCAATGGCACGATATAAATAGTTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTg                                                                                                                          <  1:968551/139‑1 (MQ=255)
                   atgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTg                                                                                                                          <  1:1016760/141‑1 (MQ=255)
                   atgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTg                                                                                                                          >  1:546301/1‑141 (MQ=255)
                    tgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGa                                                                                                                         <  2:391449/141‑1 (MQ=255)
                    tgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGa                                                                                                                         <  2:631169/141‑1 (MQ=255)
                    tgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGa                                                                                                                         >  1:451574/1‑141 (MQ=25)
                     gtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGaa                                                                                                                        <  1:790483/141‑1 (MQ=255)
                      tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAAc                                                                                                                       >  2:349931/1‑141 (MQ=19)
                      tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAAc                                                                                                                       >  2:584547/1‑141 (MQ=255)
                        ccTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAAccc                                                                                                                     >  1:606092/1‑141 (MQ=25)
                         ctctGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCa                                                                                                                    <  1:913998/141‑1 (MQ=255)
                           ctgtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAAc                                                                                                                  <  2:770767/137‑1 (MQ=255)
                           ctGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAAc                                                                                                                  >  2:963294/1‑141 (MQ=21)
                             gCATCAATGGCCCGATACAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACgg                                                                                                                <  1:322406/141‑1 (MQ=255)
                             gCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACgg                                                                                                                <  1:373545/141‑1 (MQ=18)
                             gCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACgg                                                                                                                <  2:52992/141‑1 (MQ=21)
                             gCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACgg                                                                                                                <  1:139399/141‑1 (MQ=18)
                                tCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCCTGAACCCAACGGTAg                                                                                                             >  1:868715/1‑141 (MQ=255)
                                 cAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGa                                                                                                            <  2:46156/141‑1 (MQ=21)
                                  aaTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGat                                                                                                           >  2:164590/1‑140 (MQ=16)
                                   aTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCTAATTTGATA‑TAAAATTGGGGCATATTCTTGATCCCAACGGCAGAcc                                                                                                          >  2:145332/1‑141 (MQ=255)
                                   aTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGatc                                                                                                          <  2:248754/141‑3 (MQ=255)
                                       cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTg                                                                                                      >  2:649518/1‑141 (MQ=255)
                                         cGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGaa                                                                                                    >  2:19452/1‑141 (MQ=255)
                                            tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTGTTGTAAATTTGATA‑TAAAATTGGGGCGGGTTCTTGAACCCAACGGTAGATCGTTGAatga                                                                                                 >  1:884320/1‑141 (MQ=11)
                                             ataAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatgat                                                                                                <  1:720462/141‑1 (MQ=40)
                                             ataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCATTGAatgat                                                                                                <  1:666670/141‑1 (MQ=11)
                                              taAATAGCTCCCTTTTCCTTTTATTTTGATATACCTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgatg                                                                                               <  1:499859/141‑1 (MQ=11)
                                              taAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgatg                                                                                               >  1:998556/1‑141 (MQ=255)
                                              taAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgatg                                                                                               >  1:1042040/1‑141 (MQ=255)
                                               aaaTAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAAtgatga                                                                                              >  2:815922/1‑141 (MQ=21)
                                               aaaTAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAAtgatga                                                                                              <  2:721065/141‑1 (MQ=40)
                                                aaTAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGaa                                                                                             >  1:398882/1‑141 (MQ=40)
                                                aaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                                                                                             <  1:810395/141‑1 (MQ=255)
                                                aaTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                                                                                             >  1:596342/1‑141 (MQ=255)
                                                 aTAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAAc                                                                                            >  2:1021839/1‑141 (MQ=21)
                                                 aTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAAc                                                                                            >  2:333713/1‑141 (MQ=255)
                                                        cATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTaca                                                                                     >  1:623574/1‑141 (MQ=21)
                                                          ttttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc                                                                                   <  1:483837/141‑1 (MQ=255)
                                                          cttatcTTCTATTCTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc                                                                                   <  2:566734/136‑1 (MQ=11)
                                                           tttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacca                                                                                  >  2:599123/1‑141 (MQ=25)
                                                             tCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTTTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACg                                                                                >  2:979792/1‑141 (MQ=255)
                                                               cTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTATTAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTTAATGGTGACCGTTTACNCCAGGtt                                                                              >  2:784678/1‑141 (MQ=11)
                                                               cTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGtt                                                                              >  1:689489/1‑141 (MQ=255)
                                                               cTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGtt                                                                              >  2:865387/1‑141 (MQ=255)
                                                                ttttATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGtggtgtaaacgttc                                                                             <  1:305024/141‑14 (MQ=11)
                                                                    tttttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                         <  2:110254/140‑1 (MQ=255)
                                                                    aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                         <  2:837512/141‑1 (MQ=25)
                                                                    aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                         <  2:85235/141‑1 (MQ=25)
                                                                    aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                         <  2:674906/141‑1 (MQ=21)
                                                                    aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACAGTAAAATGATGCACGTCTTCGCCACGTTCCCtt                                                                         <  2:180033/141‑1 (MQ=11)
                                                                    aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt                                                                         <  2:946805/141‑1 (MQ=11)
                                                                     ttttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTa                                                                        <  1:702051/141‑1 (MQ=21)
                                                                      tttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTaa                                                                       <  2:421469/141‑1 (MQ=18)
                                                                        tGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAata                                                                     <  1:582217/141‑1 (MQ=21)
                                                                         gatatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc                                                                                   <  1:115396/122‑1 (MQ=255)
                                                                         gatatACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat                                                                    >  1:217438/5‑141 (MQ=11)
                                                                         gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat                                                                    <  2:230494/141‑1 (MQ=21)
                                                                         gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat                                                                    >  1:942998/1‑141 (MQ=21)
                                                                         gATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat                                                                    >  1:983235/1‑141 (MQ=21)
                                                                             tACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCa                                                                >  1:175857/1‑141 (MQ=40)
                                                                              aCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAg                                                               >  2:709177/1‑141 (MQ=255)
                                                                               cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAACTTGGGGCATATTCTGGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTGCTCTTAATATTTCAGa                                                              >  2:287418/1‑141 (MQ=11)
                                                                               cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGa                                                              >  1:825624/1‑141 (MQ=255)
                                                                               cGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGGTCTCTTAATATTTCAGa                                                              >  1:925636/1‑141 (MQ=255)
                                                                                gTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAggt                                                             <  2:74530/141‑3 (MQ=255)
                                                                                gTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGat                                                             <  2:267373/141‑1 (MQ=21)
                                                                                     atcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAACTTGGGGAATCTTCTTGCACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATc                                                        <  1:43504/141‑1 (MQ=11)
                                                                                     atcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATc                                                        <  2:483111/141‑1 (MQ=255)
                                                                                     atcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATc                                                        <  2:540924/141‑1 (MQ=255)
                                                                                     atcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGAAA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATc                                                        <  2:878922/141‑1 (MQ=16)
                                                                                      tcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCa                                                       <  1:53037/141‑1 (MQ=18)
                                                                                      tcaATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCa                                                       >  2:127272/1‑141 (MQ=21)
                                                                                        aaTACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGTGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGCTTACACTACGTTCCCTCAATATTTCAGCAATACCACg                                                     >  2:308409/1‑141 (MQ=11)
                                                                                           aCGCCATTTGTAATAAGCTTTTTTTTTCTTTTTCTTCCAAATTTGATA‑TAAAATTGGTGCATATTCTTGAACCCAACGTTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATa                                                  >  2:500237/1‑141 (MQ=11)
                                                                                            cGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATag                                                 >  2:368717/1‑140 (MQ=255)
                                                                                               cATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTc                                              <  2:549869/141‑1 (MQ=11)
                                                                                               cATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTc                                              <  2:917338/141‑1 (MQ=21)
                                                                                                 tttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCaa                                            <  1:342404/141‑1 (MQ=11)
                                                                                                 tttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCaa                                            >  1:418218/1‑141 (MQ=40)
                                                                                                  ttGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TCAAATTGGTGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAAt                                           <  1:205521/141‑1 (MQ=11)
                                                                                                     taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgca                                        <  2:79271/141‑3 (MQ=11)
                                                                                                     taataaGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑TAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATgca                                        <  2:444463/141‑3 (MQ=17)
                                                                                                                     gCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGc                        <  1:747235/141‑1 (MQ=35)
                                                                                                                           tcttcCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACgg                  <  1:248494/141‑1 (MQ=35)
                                                                                                                                            |                                                                                                                                            
GCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATA‑CAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATC  >  CP000730/36239‑36518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑