New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2440052	42 (1.080)	3 (0.080)	3/254	5.7	6.7%	intergenic (+13/+53)	USA300HOU_2302/glvC	hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
	?	CP000730	= 2440086	45 (1.270)					intergenic (+47/+19)	USA300HOU_2302/glvC	hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2439906‑2440052 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGTAACAATTT  <  CP000730/2440086‑2439950                                                                                                                                                                                                                                                                                              ATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAta                                                                                                                                                 <  2:379913/141‑3     GTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA                                                                                                                                             <  2:93916/141‑1     GTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA                                                                                                                                             <  2:45239/141‑1                                   AATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCAT                                                                                                               <  2:444546/141‑1                                                   TTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTT                                                                                               <  2:348375/141‑1                                                          CGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTAT                                                                                        <  2:251559/141‑1                                                                                                                                             ACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGTAACAA     <  2:69519/141‑1                                                                                                                                              CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGTAACAAT    >  2:225481/1‑141                                                                                                                                                CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGTAACAATTT  >  2:299504/1‑141                                                                                                                                                                                                                                                                                              ATAAGTCTCATGCACATATTATATGTACGCCAGAAATATTTGCTAAATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2439906‑2440052 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTGGCAGATAGAATGTCGATATTTCTAGTTGCAATCGTATGTAACAATTT  <  CP000730/2440086‑2439950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.