New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1697752 =75 (0.820)5 (0.060) 5/228 NT 7.8% intergenic (+8/+37) rpsT/holA ribosomal protein S20/possible DNA‑directed DNA polymerase III delta subunit
?CP000730 1697788 = 52 (0.650)intergenic (+44/+1) rpsT/holA ribosomal protein S20/possible DNA‑directed DNA polymerase III delta subunit

CAACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1697902‑1697752
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTCCTAA  >  CP000730/1697788‑1697923
                                                                                                                                                                                                                                                                                               
CAACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGA                                                                                                                                                    >  1:897865/1‑141
CAACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGA                                                                                                                                                    <  1:829322/141‑1
 AACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAA                                                                                                                                                   >  2:977096/1‑141
      GATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTT                                                                                                                                              >  2:914398/1‑141
       ATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTTA                                                                                                                                             >  1:931509/1‑141
         GAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATT                                                                                                                                           >  2:29689/1‑141
                                                   AAACTTAAATCATCATATATGGATAAACAGTTACTACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCTCATGCTTGACCTTTTATTTTTTATAAAGATAGAATGCATAATTCCAGTATTAATTTTTTA                                                                                                 >  2:80833/1‑141
                                                   AAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTA                                                                                                 <  1:502180/141‑1
                                                         AAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATA                                                                                           <  2:647456/141‑1
                                                                          TAAACAGTTCATACCGGAATTATTCATTCTATATTTATAAAAAATAAAAGTTCAAGCGCATGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTCACTGTATTACCATATATGATGATTTAAGTTT                                                                          <  1:536300/141‑1
                                                                                                                         AAGTTCAAGCATGCGCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAA                           >  1:955031/1‑141
                                                                                                                                       GCTTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATCATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTT             <  1:617699/141‑1
                                                                                                                                       GCTTCAACTTTTATTTTTTATAAAGATAGAATTAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTT             <  1:537701/141‑1
                                                                                                                                         TTGACCTTTTTGTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTAC           <  2:771355/141‑1
                                                                                                                                         TTGAACTTTTATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTAAATAATTAATCAAGTTGATAATGTCTTAC           >  2:737678/1‑141
                                                                                                                                                  TATTTTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCGTATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCATGTTGATATTGTCTTATTTGTCCTAA  >  2:55015/1‑141
                                                                                                                                                                                                                                                                                               
CAACTTGATGAATTATTGAATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTCATTCTATCTTTATAAAAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1697902‑1697752
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgaacttttatttTTTATAAAGATAGAATGAATAATTCCAGTATTAACTGTTTATCCATATATGATGATTTAAGTTTATAATCAGTTTCCGCACAAGCATCTATAATATTCAATAATTCATCAAGTTGATAATGTCTTACTTGTCCTAA  >  CP000730/1697788‑1697923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.