New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =112 (1.220)69 (1.090)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA
37/180 NT 47.2% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA

GATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998141‑1998418
                                                                                                                                         |                                                                                                                                            
gATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCTGATTTaaaa                                                                                                                                           <  1:811447/141‑1 (MQ=255)
       aGTCAGTTGCTCTAGCAATTGAGCTAGACCGGCAATATGTAAGAATAAATGGTGGAGAATGAAGGGATCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGCGCTAATGCCCCGATTTAAAACTGcccg                                                                                                                                    >  2:326559/1‑139 (MQ=14)
       aGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGCTTTAAAACTGCCTg                                                                                                                                    >  1:733936/1‑141 (MQ=255)
        gTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGCGCTAATTCTCCGAATTAAAACTGCCTgg                                                                                                                                   >  1:12557/1‑141 (MQ=255)
        gTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAAGAGTTGAGAATGACGGGGTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTgg                                                                                                                                   >  2:1064283/1‑141 (MQ=255)
         tCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAACCTGCCTGGc                                                                                                                                  >  2:913535/1‑141 (MQ=255)
         tCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGc                                                                                                                                  <  2:987861/141‑1 (MQ=255)
         tCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCCCTGCTAGTAAGGCAGATCCCCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTCGc                                                                                                                                  >  2:15638/1‑141 (MQ=14)
         tCAGTTGCTCTACCAATTGAGCTAGGCCGGAAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAAGTCTCCGATTGAAAGCTGCCGGGc                                                                                                                                  >  2:588549/1‑141 (MQ=14)
            gTTGCTCTACCAATTGAGCTAGGGCGGCAATATGTAAGAATAAATGGTGGAGAATGAAGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGGAGATGCTATACCAGCTGAGCTAATTCTCGGGTTTAAAACTGCCAggacaa                                                                                                                               >  1:86181/1‑137 (MQ=14)
            gTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGTACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                               <  1:805603/141‑1 (MQ=255)
            gTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCCCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                               >  2:230845/1‑141 (MQ=255)
               gCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGtt                                                                                                                            >  2:308809/1‑141 (MQ=255)
               gCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGtt                                                                                                                            >  1:693146/1‑141 (MQ=255)
                 tctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCt                                                                                                                          <  2:808514/141‑1 (MQ=255)
                  ctACCAATTGAGCTAGGCCGGCAATGTGTAAGAATAAATGGTGGAGAATGACGGGTTCGGACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAGCGTTCTa                                                                                                                         >  2:555972/1‑141 (MQ=255)
                  ctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCtc                                                                                                                         >  2:856433/1‑140 (MQ=255)
                  ctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTGCTa                                                                                                                         >  2:389107/1‑141 (MQ=255)
                     ccAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTActc                                                                                                                      >  1:786518/1‑141 (MQ=255)
                        aTTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTAgtctgg                                                                                                                   >  1:360193/1‑139 (MQ=255)
                            aGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGa                                                                                                               >  1:56662/1‑141 (MQ=255)
                             gCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGaa                                                                                                              >  2:535442/1‑141 (MQ=255)
                             gCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAAGTTCTACTCTAGCgtag                                                                                                              >  2:657233/1‑138 (MQ=255)
                              cTAGGCCGGCAATATGTAAGAATAAATGGTGGAGATTGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCCCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAAc                                                                                                             >  2:352521/1‑141 (MQ=255)
                                aGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt                                                                                                           <  2:751083/141‑1 (MQ=255)
                                          tatGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACt                                                                                                 <  2:64636/141‑1 (MQ=255)
                                            tGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                               <  1:467920/141‑1 (MQ=255)
                                            ggTAATAAAAAAGGGGGTAGAATGACGGGTTCTATCCGCCTCCCCGCTGCTTTGAAGGCAGATGCTCCCCCAGCTGAGCTAATTCGCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                               <  2:30606/140‑1 (MQ=14)
                                             gTAAGAATAATTGGGGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                              <  2:274079/141‑1 (MQ=255)
                                             gTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                              >  2:643814/1‑141 (MQ=255)
                                              tAAGAATAAATGGTGGAGAATGACGGATTCGAACCGCCGAAACTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTAAGATATAAAACTGCCTGGCAACGCTCTACTCTAGCGGCCCGTAAATACGACTACCa                                                                                             >  1:225240/1‑141 (MQ=14)
                                               aaGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCAt                                                                                            <  2:177246/141‑1 (MQ=255)
                                                aGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAGGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATc                                                                                           >  1:905093/1‑141 (MQ=255)
                                                   aTAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGAc                                                                                        <  2:247607/141‑1 (MQ=255)
                                                   aTAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCAAACAGGTAGAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGAc                                                                                        <  1:1037766/141‑1 (MQ=14)
                                                   aTAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGAATATGCTCTCCCAGCTGCGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTCCTCTAGCGGAACGTAAGCTCGACTACCATCGAc                                                                                        <  1:973005/141‑1 (MQ=14)
                                                    ataaTCGTTGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGGAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACg                                                                                       <  1:1075570/139‑1 (MQ=255)
                                                      aaTGGTGGAGAATGACGAGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTGTCCCAGCTGAGCTAATTCTCCGAGTTAAAACTGCCTGGCAACGGTCTACTCTAGCGGAAGGTAAGTTCGACTACCATCGACGCt                                                                                     >  2:401555/1‑141 (MQ=14)
                                                       aTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTa                                                                                    >  2:147181/1‑141 (MQ=255)
                                                          gtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCTACGCTAAgg                                                                                 >  2:168699/1‑141 (MQ=255)
                                                          gtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTCAgg                                                                                 >  2:225965/1‑141 (MQ=255)
                                                          gtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGAGGGTCACCAAGCTGAGCTAATTCTCCGATTTAAAAGTGCCTGGCAACGTTCTACTCTAGCGGTGCGTAATTTCGACGACCATCGACACTaaag                                                                                 >  2:1001181/1‑139 (MQ=14)
                                                            ggAGAACTACGGGTTCGACCCGCCGACCCTCTGCTTGTAAGGCAGATGCGCTCCCAGTTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAg                                                                               <  2:38303/141‑1 (MQ=14)
                                                            gacaaacgACGGGTTCGAACCGCCGCCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACCGCCTGGCAACGTTCTACTCTAGCGGAACGGAAGTTCGACTACCATCGACGCTAAGGAg                                                                               <  1:240974/134‑1 (MQ=14)
                                                             gagaATGACGGGTTCGAACCCCCGACCCTCTGCTTGTAAGGCAGCTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGGTCGACTACCATCGACGCTAAGGAGc                                                                              <  2:2684/141‑1 (MQ=255)
                                                                 aTGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTaa                                                                          >  1:420093/1‑141 (MQ=255)
                                                                  tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAc                                                                         >  1:144405/1‑141 (MQ=255)
                                                                   gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTAGACTACCATCGACGCTGAGGAGGTTAACt                                                                        >  1:369673/1‑141 (MQ=255)
                                                                    aCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                       >  2:335384/1‑141 (MQ=255)
                                                                      gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCt                                                                     >  2:1104881/1‑141 (MQ=255)
                                                                      gggTCCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCt                                                                     <  2:222173/141‑1 (MQ=255)
                                                                         ttCGAGCCGCCGCCCCTCTGCTTGTAAGCCGGTTGCTCTCCCAGCTGTTCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTTCTCTAGAGGAACGTAAGTTCGATTACCATCGACGCTAAGGAGCTTattccgtcgg                                                                  <  2:957549/141‑10 (MQ=14)
                                                                           cGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGtt                                                                <  1:28440/141‑1 (MQ=255)
                                                                              aCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                             >  2:342820/1‑141 (MQ=255)
                                                                                  ccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                         <  1:308809/141‑1 (MQ=255)
                                                                                  ccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                         <  2:693146/141‑1 (MQ=255)
                                                                                     aCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATgggg                                                      >  1:50820/1‑140 (MQ=255)
                                                                                     aCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                      >  1:598718/1‑141 (MQ=255)
                                                                                      cccTCTTCTTGTAAGGCCGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTTCCTGGCAACGTTCTACTCTGGCTGAACGTAAGTTCGACTATCATCGACGCTAAGGATCTTAACGTCTGTGTTCGGCATGTGaa                                                     <  2:483308/141‑1 (MQ=14)
                                                                                      cccTCGGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                     <  2:1039977/141‑1 (MQ=255)
                                                                                            gCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgtg                                               <  2:524332/141‑1 (MQ=255)
                                                                                             cTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGgtgt                                              >  1:925989/1‑141 (MQ=255)
                                                                                              ttGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGtgtg                                             <  1:185849/141‑1 (MQ=255)
                                                                                                gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                           <  1:402056/141‑1 (MQ=255)
                                                                                                gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                           >  1:594185/1‑141 (MQ=255)
                                                                                                gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                           >  1:634671/1‑141 (MQ=255)
                                                                                                gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                           >  1:825357/1‑141 (MQ=255)
                                                                                                gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                           <  1:331252/141‑1 (MQ=255)
                                                                                                gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                           <  2:87695/141‑1 (MQ=255)
                                                                                                 tAAGGCAGATGCTCTCCCCGCTGCGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcc                                          <  2:1086204/141‑1 (MQ=255)
                                                                                                 tAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcc                                          <  2:36671/141‑1 (MQ=255)
                                                                                                     gCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGACCAGGTGTGAcctcct                                      >  2:1017838/1‑141 (MQ=255)
                                                                                                     gCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcct                                      >  2:396008/1‑141 (MQ=255)
                                                                                                     gCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCGTAACTTCTGTGTTCGGCATGGGAAGAGgtgttggctcct                                      >  1:361611/1‑133 (MQ=255)
                                                                                                      cAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     >  1:347323/1‑141 (MQ=255)
                                                                                                        gATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGGACAGGTGTGACCTCCTTGc                                   <  2:694092/141‑1 (MQ=255)
                                                                                                          tGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                                 >  1:760031/1‑141 (MQ=255)
                                                                                                           gCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtat                                >  1:122473/1‑141 (MQ=255)
                                                                                                            ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCGTGGGAACAGGTGTGACCTCCTTGCtata                               >  1:557685/1‑141 (MQ=255)
                                                                                                            ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtata                               <  1:643814/141‑1 (MQ=255)
                                                                                                            ctctCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtata                               >  1:870168/1‑141 (MQ=255)
                                                                                                             cctcCCAGCTTAGCTAATTCTCCGATTTAAAACTGCCTCGAAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                              <  2:369673/140‑1 (MQ=255)
                                                                                                             cctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                              <  2:795969/140‑1 (MQ=255)
                                                                                                             cctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACGCTAGCGGAACGTAAGTTCGACTACCAGCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGTTGTGACCTCCTTGCtatat                              <  2:130243/140‑2 (MQ=255)
                                                                                                                      tgggCTAATTCTCCGATTTAAACCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGAc                     <  1:442107/138‑1 (MQ=255)
                                                                                                                         gCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGGACAGGTGTGACCTCCTTGCTATAGTCACCAGCCata                  >  2:733100/1‑141 (MQ=255)
                                                                                                                         gCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACata                  >  1:450925/1‑141 (MQ=255)
                                                                                                                                  ccGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTaa         >  2:1038823/1‑141 (MQ=39)
                                                                                                                                  ccGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTaa         >  2:77741/1‑141 (MQ=39)
                                                                                                                                   cGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAt        <  1:345241/141‑1 (MQ=38)
                                                                                                                                      tttAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCCTCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGGACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGACTGTAAttca     >  2:510169/1‑139 (MQ=255)
                                                                                                                                       ttAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtat    <  1:335384/141‑1 (MQ=35)
                                                                                                                                         aaaaCTGCCTGGCAACGTTCTCCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTAATAc  <  1:751128/141‑1 (MQ=18)
                                                                                                                                         aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAc  <  2:1035733/141‑1 (MQ=33)
                                                                                                                                         |                                                                                                                                            
GATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998141‑1998418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.