Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 460,262 G→A 5.7% intergenic (+111/‑272) hsdS1 → / → set type I site‑specific deoxyribonuclease specificity subunit/staphylococcal exotoxin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730460,2620GA 5.7% 314.2 / 4.8 103intergenic (+111/‑272)hsdS1/settype I site‑specific deoxyribonuclease specificity subunit/staphylococcal exotoxin
Reads supporting (aligned to +/- strand):  ref base G (43/54);  new base A (3/3);  total (46/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.16e-01

Only 100 of 104 total aligned reads displayed.

CAATCCTTTTTACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGATATTAGTTAACTATTTATTAAATT  >  CP000730/460122‑460399
                                                                                                                                            |                                                                                                                                         
cAATCCTTTTTACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAgcg                                                                                                                                           <  1:892646/141‑1 (MQ=255)
   tCCGTTTTACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAACTTAGGCACTGTGAAAGCGCAg                                                                                                                                        <  2:927293/141‑1 (MQ=255)
    ccTTTTTACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAgt                                                                                                                                       <  1:195047/141‑1 (MQ=255)
    ccTTTTTACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCACAgt                                                                                                                                       >  1:624559/1‑141 (MQ=255)
    ccTTTTTACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCACAgt                                                                                                                                       >  1:1019783/1‑141 (MQ=255)
    ccTTTTTACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCACAgt                                                                                                                                       >  1:203962/1‑141 (MQ=255)
          tACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCttt                                                                                                                                 <  2:167452/141‑1 (MQ=255)
          tACAAAAAATGGTCTTAAAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCttt                                                                                                                                 <  1:244683/141‑1 (MQ=255)
            cAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCttttt                                                                                                                               >  1:63903/1‑141 (MQ=255)
              aaaaaTGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTtg                                                                                                                             <  2:761586/141‑1 (MQ=255)
               aaaaTGTTCTTATAAATTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTtgt                                                                                                                            <  1:33506/141‑1 (MQ=255)
                    gTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGa                                                                                                                       <  2:383130/141‑1 (MQ=255)
                    gTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGa                                                                                                                       >  1:1090091/1‑141 (MQ=255)
                     ttCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTTTCGaa                                                                                                                      >  2:82364/1‑141 (MQ=255)
                      tCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCGCTGTGAAAGCGCAGTGTCTTTTTTGTGTCGaaa                                                                                                                     >  2:892238/1‑141 (MQ=255)
                      tCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGaat                                                                                                                     >  2:246471/1‑140 (MQ=255)
                      tCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGaaa                                                                                                                     >  1:309926/1‑141 (MQ=255)
                             aCTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTa                                                                                                              <  2:1053188/141‑1 (MQ=255)
                                 tGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGa                                                                                                          <  2:2072/141‑1 (MQ=255)
                                 tGATAAATAAATAGATTGTCTAAGAATAAAATTTGTATAATCTAACAGAAAGGTTTTATAAGTAAGGGGAATGAAAATCGATTGTTGAATTTTGGCACTTTGGAATCGCAGTGTATTTTTTATGTGGacgcggtgctggct                                                                                                          <  2:407204/141‑14 (MQ=255)
                                  gATAAATACCTAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGCTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCATTGTCTTTTTTGTGTCGAAATTGTGTACAGaa                                                                                                         <  2:360035/141‑1 (MQ=255)
                                  gATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGaa                                                                                                         <  1:182349/141‑1 (MQ=255)
                                   aTAAATACATAGAGTGCATAAGAATAAAATTTGTATAATTTTACATTGTAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATGTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAAt                                                                                                        <  2:1061462/141‑1 (MQ=255)
                                     aaaTACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTTTCTTTTTTTTTTTGAAATTGTGTACAggagaa                                                                                                      >  2:399238/1‑136 (MQ=255)
                                      aataaataGATTGCATAAGAATAAAATTGGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTGAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAag                                                                                                     <  2:26166/141‑1 (MQ=255)
                                      aaTGCATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAag                                                                                                     <  2:179345/141‑1 (MQ=255)
                                      aaTACATAGATTGGATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAag                                                                                                     <  2:240746/141‑1 (MQ=255)
                                      aaTACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAag                                                                                                     <  2:1083401/141‑1 (MQ=255)
                                      aaTACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAag                                                                                                     >  1:831195/1‑141 (MQ=255)
                                      aaTACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAag                                                                                                     >  1:1015524/1‑141 (MQ=255)
                                       aTACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAagt                                                                                                    >  1:372044/1‑141 (MQ=255)
                                               aTTGCATAAGACTAAAATTTGTATAATTTAACATACAAGTTGCAAAAGTAAAGTGAATTAAAAACGAACATTACATTTAGGACCTGTGAAGGCGCAGTGTCTTTTTTGTGTCGAAGTTGTGTACAGAATAAGTAGTgaaat                                                                                            >  2:18449/1‑141 (MQ=255)
                                                  gCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTtaaataaa                                                                                         <  1:846638/141‑1 (MQ=255)
                                                    ataataataAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGa                                                                                       <  2:609793/141‑1 (MQ=255)
                                                    aTAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGa                                                                                       <  1:344029/141‑1 (MQ=255)
                                                    aTAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGa                                                                                       <  1:399065/141‑1 (MQ=255)
                                                      aaGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGAtt                                                                                     <  2:727030/141‑1 (MQ=255)
                                                      aaGAATAAAATTTGTAGAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGAtt                                                                                     <  2:859301/141‑1 (MQ=255)
                                                       aGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTa                                                                                    >  1:793717/1‑141 (MQ=255)
                                                       aGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTa                                                                                    >  2:873111/1‑141 (MQ=255)
                                                       aGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTGTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATCAAGATTa                                                                                    >  1:876397/1‑141 (MQ=255)
                                                        gAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTaa                                                                                   >  1:366735/1‑141 (MQ=255)
                                                         aaTAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAAAAAGTAGTTAAATCAAGATTAAg                                                                                  >  2:94467/1‑141 (MQ=255)
                                                          aTAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGt                                                                                 <  1:1053959/141‑1 (MQ=255)
                                                          aTAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGt                                                                                 <  1:333804/141‑1 (MQ=255)
                                                            aaaaTTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTg                                                                               <  1:589517/141‑1 (MQ=255)
                                                            aaaaTTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAAAGAACATTAAATTTAGGCAATGTGAAAGCGCAGCGTCTATTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTg                                                                               <  2:1047598/141‑1 (MQ=255)
                                                             aaaTTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTga                                                                              <  1:620697/141‑1 (MQ=255)
                                                               aTTTGTATTAGTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTgaga                                                                            <  2:1052330/141‑1 (MQ=255)
                                                               aTTTGTATAATTTACAATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACTGAATAAGTAGTTAAATAAAGATTAAGTCgaga                                                                            <  1:790727/141‑1 (MQ=255)
                                                               aTTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTgaga                                                                            >  1:541211/1‑141 (MQ=255)
                                                               aTTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTGTTGTGTCGAAATGGTGTACAGAATACGTAGTGAAATGAAGGTTAAGGTgaga                                                                            >  1:6900/1‑141 (MQ=255)
                                                               aTTTGTATAATTTAACATAAAAATATAAAAATTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGTGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTgaga                                                                            >  1:264585/1‑141 (MQ=255)
                                                               aTTTGTATAATTTAACAAAAAAGGTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTgaga                                                                            <  1:508327/141‑1 (MQ=255)
                                                                  tGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGGTaa                                                                         >  1:923809/1‑141 (MQ=255)
                                                                     ataATTTAACATAGAAGTTGGAAAAGTGAAGGGAGTTAAAGACGAACAGTAAATGTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAgt                                                                      <  1:349186/141‑1 (MQ=255)
                                                                     ataATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAgt                                                                      <  2:697894/141‑1 (MQ=255)
                                                                     ataATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAgt                                                                      <  1:996266/141‑1 (MQ=255)
                                                                     ataATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAgt                                                                      <  2:830421/141‑1 (MQ=255)
                                                                      taATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAgtg                                                                     <  1:35964/141‑1 (MQ=255)
                                                                              cATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGt                                                             >  2:449426/1‑141 (MQ=255)
                                                                                 aaaaGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCGCTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGtaaa                                                          >  2:598221/1‑141 (MQ=255)
                                                                                     gTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTAGtaaataga                                                      >  2:1084877/1‑139 (MQ=255)
                                                                                        gTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAagg                                                   >  1:875344/1‑140 (MQ=255)
                                                                                        gTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAaga                                                   >  1:159810/1‑141 (MQ=255)
                                                                                        gTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAaga                                                   >  1:375442/1‑141 (MQ=255)
                                                                                         tAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAagag                                                  <  1:844612/141‑1 (MQ=255)
                                                                                           aaagtaaagtGAATTAAAAACGAACACTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGTATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAagagag                                                <  1:674738/141‑1 (MQ=255)
                                                                                                aaagtGAAGTAAAACCGAACATTAAATTGAGGCGCTGTGAAAGCGAAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAAGAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGAt                                           <  1:109768/141‑1 (MQ=255)
                                                                                                  agtGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCg                                         <  2:497246/141‑1 (MQ=255)
                                                                                                     gAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTTTGTTGTTATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAGAGAGAGTAGATCGATa                                      >  2:712906/1‑141 (MQ=255)
                                                                                                     gAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGACCGaaa                                      >  2:56888/1‑139 (MQ=255)
                                                                                                     gAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGGAGATCGATa                                      >  1:57773/1‑141 (MQ=255)
                                                                                                      aaTTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAg                                     <  2:908764/141‑1 (MQ=255)
                                                                                                      aaTTAAAAACGAACATTAAATTTAGACACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGGGATAAAGTGTTATTCGTCAAAAAAAGAGAGTAGATCAATAg                                     >  2:395485/1‑141 (MQ=255)
                                                                                                       aTTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCACAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAgg                                    <  2:203962/141‑1 (MQ=255)
                                                                                                       aTTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCACAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAgg                                    <  2:1019783/141‑1 (MQ=255)
                                                                                                       aTTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCACAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAgg                                    <  2:624559/141‑1 (MQ=255)
                                                                                                        ttAAAAACGACCATATAATTTAGGCAATGTGAAAGCGCAGTGTATTTTTTGTGTCGAAATTGTGTACAGAATAAGGAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGa                                   <  1:347658/141‑1 (MQ=255)
                                                                                                             aaagtacgttcaaTTGAGGCACTTTGAAAGCGCAGTGGCTTTTTTGTGCCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGAATAAAAAAAAAATAAAAGAGAGTAGATCGATAGGAATTGa                              <  2:1042131/130‑1 (MQ=255)
                                                                                                             aaCGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGa                              <  2:971658/141‑1 (MQ=255)
                                                                                                             aaCGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGa                              <  1:396198/141‑1 (MQ=255)
                                                                                                               cGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAAt                            >  1:587913/1‑141 (MQ=255)
                                                                                                               cGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAAt                            <  2:736485/141‑1 (MQ=255)
                                                                                                               cGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAAt                            <  2:1090091/141‑1 (MQ=255)
                                                                                                               agAACATAAACTTTGGAGACGGTGAAAGCGAAGGGTCTTTTTGGTGTCGAGATGGGGTAGAGAAGAAGTAGTGAAAGAAAGATTAAGGTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAAt                            <  2:759800/140‑1 (MQ=255)
                                                                                                                   cATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGAGTTATTCTTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGata                        <  2:125152/141‑1 (MQ=255)
                                                                                                                    aTTAAATTTAGGCACTGTGAGAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAACAAAGATTAAGTTGAGATAAAGTGCTATTCGTAAATAAAAGAGAGGAAAGCGATAGGAATTGGATGaact                       >  2:603016/1‑138 (MQ=255)
                                                                                                                    aTTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGatat                       >  1:652484/1‑141 (MQ=255)
                                                                                                                    aTTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGAAGATCGATAGGAATTGAATGatat                       >  1:701483/1‑141 (MQ=255)
                                                                                                                       aaaTTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGCAGATCGATAGGAATTGAATGATATTAg                    >  2:295425/1‑141 (MQ=255)
                                                                                                                             aGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGATATTAGTTAACt              >  1:214885/1‑141 (MQ=255)
                                                                                                                                   tgttAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGATATTAGTTAACtatttat        <  2:867049/141‑1 (MQ=255)
                                                                                                                                   tgtgAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGATATTAGTTAACtatttat        >  1:3272/1‑141 (MQ=255)
                                                                                                                                    gtgAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGATATTAGTTAACtatttatt       <  2:63903/141‑1 (MQ=255)
                                                                                                                                       aaaGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGTGAGAAGATCGCTAGGAATTGAGTGATATTAGTTAACTATTTATTaaa    >  2:59389/1‑141 (MQ=255)
                                                                                                                                       aaaGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGAGTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAGTGATATTAGTTAACTATTTATTaaa    >  2:605152/1‑141 (MQ=255)
                                                                                                                                        aaGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAGTAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGATATTAGTTAACTATTTATTAAAt   >  1:731109/1‑141 (MQ=255)
                                                                                                                                         aGCGCAGTGTCTTTTTTGTGTCGCAATTGTGTAGAGAATAAGTAGTTAAATAAAGATTAAGTTGAGAGAAAGTGTTATACGTAAATAAAAGAGAGTAGATCGAGAGGAATTGAATGATATTAGTTAACTATTTATTAAAtt  >  2:131472/1‑141 (MQ=255)
                                                                                                                                         aGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGCAGATCGATAGGAATTGAATGATATTCGTTAACTCTTTATTAAAtt  >  1:92346/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                         
CAATCCTTTTTACAAAAAATGTTCTTATAACTTTGATAAATACATAGATTGCATAAGAATAAAATTTGTATAATTTAACATAAAAGTTGTAAAAGTAAAGTGAATTAAAAACGAACATTAAATTTAGGCACTGTGAAAGCGCAGTGTCTTTTTTGTGTCGAAATTGTGTACAGAATAAGTAGTTAAATAAAGATTAAGTTGAGATAAAGTGTTATTCGTAAATAAAAGAGAGTAGATCGATAGGAATTGAATGATATTAGTTAACTATTTATTAAATT  >  CP000730/460122‑460399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: