Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 1,689,325 T→C 5.6% T181A (ACA→GCA)  dnaJ ← chaperone DnaJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,689,3250TC 5.6% 229.5 / 2.5 86T181A (ACA→GCA) dnaJchaperone DnaJ
Reads supporting (aligned to +/- strand):  ref base T (38/41);  new base C (2/3);  total (42/44)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

TTCAGGTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGATTGAAATTTCTTTTGTTGTACCAAATA  >  CP000730/1689185‑1689465
                                                                                                                                            |                                                                                                                                            
ttCAGGTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTGTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATtgt                                                                                                                                              >  2:793270/1‑141 (MQ=255)
ttCAGGTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATtgt                                                                                                                                              >  1:894683/1‑141 (MQ=255)
 tCAGGTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATtgtg                                                                                                                                             <  2:1047202/141‑1 (MQ=255)
 tCAGGTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATtgtg                                                                                                                                             <  1:860515/141‑1 (MQ=255)
  cAGGTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACCTTTCGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTgtgt                                                                                                                                            <  1:982948/141‑1 (MQ=255)
     gTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGtttt                                                                                                                                         <  2:716269/141‑1 (MQ=255)
     gTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGtttt                                                                                                                                         <  2:404643/141‑1 (MQ=255)
        cTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAGGCTTCTTCACATTCTTGACCACTTCCATTACATTTAGGACAAACTAGTTCAGTACGAACTCTACCTAAAATTGTGTTTTgct                                                                                                                                      >  2:904938/1‑139 (MQ=255)
        cTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTATGCACTCTACCAAAAATTGTGTTTTGtt                                                                                                                                      >  1:197549/1‑141 (MQ=255)
        cTTTCACTGCTAATTTAACTGTTTTATATTCAGTACCTTTTCCGTGACATGTTGGGCAAGCGTCTTCAAATTCTTAACCACTTCCATTACATTTAGGACATACTTGTTCCGTACGAACTCTACCTAAAATTGGGTTTTGtt                                                                                                                                      >  2:944206/1‑141 (MQ=255)
         tttCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAAATCTACCTAAAATTGTGTTTTGTTc                                                                                                                                     >  2:1090512/1‑141 (MQ=255)
         tttCACTTCTAATTTAACTGTTTCATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTc                                                                                                                                     <  2:321740/141‑1 (MQ=255)
         tttCACTTCTAATCTAACTGTTTTCTTGTCAGGGCCTATTCCGTATAAAACATGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTc                                                                                                                                     <  1:520144/141‑1 (MQ=255)
           tCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATGTAGGACAAACTTGTTCAGTACGATCTCCACCTAAAATTGTGTTTTGTTCTa                                                                                                                                   <  2:784899/141‑1 (MQ=255)
            taCTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTAc                                                                                                                                  <  1:653249/140‑1 (MQ=255)
             aCTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACa                                                                                                                                 >  2:39140/1‑141 (MQ=255)
             aCTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACa                                                                                                                                 >  2:689879/1‑141 (MQ=255)
             aCTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACa                                                                                                                                 >  1:438858/1‑141 (MQ=255)
             aCTTCTAATTTAACTCTTTTCTTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAACTTGTGTTTTTTTCTAcc                                                                                                                                 >  1:821483/1‑140 (MQ=255)
              cTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTTCTGGGCATTATCGACCAGCCTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCtgtag                                                                                                                                >  1:260105/1‑137 (MQ=255)
              cTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAg                                                                                                                                >  1:123368/1‑141 (MQ=255)
                  tAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTACAATTGTGTTTTGTTCTACAGCTAc                                                                                                                            >  1:818930/1‑141 (MQ=255)
                  tAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTAc                                                                                                                            <  1:906059/141‑1 (MQ=255)
                   aaTTTAACTGTTTTATTTTCAGTAGCTTTTCCGTGACACGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACa                                                                                                                           >  1:710710/1‑141 (MQ=255)
                   aaTTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACACTACCTAAAATTGTGTTTTGTTCTACAGCTACa                                                                                                                           >  2:330247/1‑141 (MQ=255)
                   aaTTCAACTGTCTTATTTTCATGACCTTTTCCGTCACATGTTGCACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACa                                                                                                                           <  1:870001/141‑1 (MQ=255)
                     tttAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTCCCTAAAATTGTGTTTTGTTCTACAGCTACATg                                                                                                                         <  2:638913/141‑1 (MQ=255)
                         aCTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGCGTTTTGTTCTACAGCTACATGACCa                                                                                                                     >  2:460787/1‑141 (MQ=255)
                         aCTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGCGTTTTGTTCTACAGCTACATGACCa                                                                                                                     >  2:460777/1‑141 (MQ=255)
                          cTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTTCAGCTACATGACCAg                                                                                                                    >  2:589134/1‑141 (MQ=255)
                          cTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTACAAATTCTTGACCACGTCCATTACATTTAGGAAAAACTTGTTAAGTAAGAACTCTACCTAAAATAGAGTTTTGTTCTCCAGCTACATGACCAg                                                                                                                    >  2:722106/1‑141 (MQ=255)
                          cTGTTTTATTTTCAGTACCTTTTCCGTGAAATGTTGGACAAGCTTCTTCATATTCTTGACCCCTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACATAAAATTGTGTTTTGTTCTCCAGCTACATGACCAg                                                                                                                    >  2:124321/1‑141 (MQ=255)
                           tgcttgaTTTTCATTCCCGTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAATTTGTTCAGTACGATCGCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAgc                                                                                                                   <  2:831166/135‑1 (MQ=255)
                           tGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAgc                                                                                                                   <  1:484248/141‑1 (MQ=255)
                            gTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAATCTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAgcg                                                                                                                  <  2:739227/141‑1 (MQ=255)
                            gTTTTATGTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGCTTTGTTCTACAGCTACATGACCAgcg                                                                                                                  <  2:684694/141‑1 (MQ=255)
                               ttATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCa                                                                                                               <  1:384248/141‑1 (MQ=255)
                               ttATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAAATGTGTTTTGTTCTACAGCTACATGACCACCGCCa                                                                                                               >  2:959275/1‑141 (MQ=255)
                                 aTTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAACCTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACCTGACCGGCGCCAtt                                                                                                             >  2:407261/1‑141 (MQ=255)
                                  ttttCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTa                                                                                                            <  2:859373/141‑1 (MQ=255)
                                  ttttCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTa                                                                                                            <  1:130688/141‑1 (MQ=255)
                                  ttttCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTa                                                                                                            <  1:130685/141‑1 (MQ=255)
                                      caatACCTTTTCCATGACATGTTAGACAAGCGTCTTCAAATTCTTGACGACTTCGATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTATGTGTTATTCTTCCAGTACATGACCCACGCTAtttcttt                                                                                                        >  2:275259/4‑136 (MQ=255)
                                       aatcccTTTTCCGTGACATGTTGGACAAGCTTCTTCAACTTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACGGCTACATGACCAGCGCCATTACAGTa                                                                                                       <  2:221724/137‑1 (MQ=255)
                                       aGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGATCAGCGCCATTACAGTa                                                                                                       <  1:550853/141‑1 (MQ=255)
                                          aCCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGCCCAGCGCCATTACAGTCACt                                                                                                    >  1:824086/1‑141 (MQ=255)
                                          aCCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACt                                                                                                    >  1:238380/1‑141 (MQ=255)
                                          aCCTTCTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATAACCAGCGCCATTACAGTAACt                                                                                                    >  2:71903/1‑141 (MQ=255)
                                             ttttCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACa                                                                                                 <  1:637534/141‑1 (MQ=255)
                                               ttCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAg                                                                                               >  1:515728/1‑141 (MQ=255)
                                                tCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGGCCAGGGTCATTACAGTAACTACAAGt                                                                                              >  1:586211/1‑141 (MQ=255)
                                                      actcgTTTGACAAGCTTCTTCAAATTCTTGACCACTTCCCGTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCCTCACAGTAACTACAAGTCttttt                                                                                        <  2:500173/137‑1 (MQ=255)
                                                        aTGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTAc                                                                                      >  1:379482/1‑141 (MQ=255)
                                                          gTTGGACAAGCTTCTTCAAATTCTTGCCCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACtt                                                                                    <  2:694117/141‑1 (MQ=255)
                                                          gTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGCGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACtt                                                                                    <  2:887459/141‑1 (MQ=255)
                                                             ggACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGtt                                                                                 <  1:368359/141‑1 (MQ=255)
                                                             ggACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGtt                                                                                 <  1:184743/141‑1 (MQ=255)
                                                             ggACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGtt                                                                                 <  1:245557/141‑1 (MQ=255)
                                                                cAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCa                                                                              <  1:715994/141‑1 (MQ=255)
                                                                   gCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGc                                                                           >  2:544903/1‑141 (MQ=255)
                                                                    cttcttCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCt                                                                          >  1:267678/1‑141 (MQ=255)
                                                                       cttcAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTg                                                                       <  1:948520/141‑1 (MQ=255)
                                                                         tcAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCCGCGCCATTACAGTAACTACAAGACTTTTTACTTGTTCCAGACTTTGca                                                                     >  1:1108652/1‑141 (MQ=255)
                                                                         tcAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTCACTACAAGTCTTATTACTTGTTCCAGCCTTTGca                                                                     >  1:506918/1‑141 (MQ=255)
                                                                              ttCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGcaccatc                                                                <  2:1101769/141‑1 (MQ=255)
                                                                              ttCTTGACCACTTCCATTACATTTAGGACAAACTCGTTCAGTACGAACTCTACCTAAAATTGTGGTTTGTTCTACAGCTTCATGACCAGCGCCATTACAGTTACTATAAGTCTCCATATAGGTTCTATGCTTTGcaccatc                                                                <  2:508344/141‑1 (MQ=255)
                                                                                cTTGACCAATTCCATTACATTTAGGACAAACTTGTTCAGTGCGATCTGTACCTAAAATGGTGTTTTGTTCTACAGCTACATGATCATCGCCATTACAGTCACTACAAGTCTTTTTACTTGTTCCAGGCTTTGcaccatcac                                                              <  2:441794/141‑1 (MQ=255)
                                                                                  tGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGcaccatcacca                                                            >  1:446585/1‑141 (MQ=255)
                                                                                    aCCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATg                                                          >  1:35750/1‑141 (MQ=255)
                                                                                    aCCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATg                                                          >  1:324036/1‑141 (MQ=255)
                                                                                      cACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGAc                                                        <  1:449056/141‑1 (MQ=255)
                                                                                           cccttACATTTTTGACAATCTTGTTCAGTACGAACTCTGCCTAAAATTGTGTTTTGTTCTACAGCTACATGAGCAGCGCCATTACTGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGtt                                                   <  2:975999/138‑1 (MQ=255)
                                                                                           ccATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGtt                                                   >  2:802832/1‑141 (MQ=255)
                                                                                                aCATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCa                                              <  1:925058/141‑1 (MQ=255)
                                                                                                      aGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTAc                                        >  2:692459/1‑141 (MQ=255)
                                                                                                             aCTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCGTGCTTTGCTGCATCACCATGACATGTCTCGTATGTTCCATCTTTa                                 >  1:783581/1‑141 (MQ=255)
                                                                                                             aCTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACCACTTTa                                 >  1:261030/1‑141 (MQ=255)
                                                                                                              cTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCTAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTAc                                <  2:710710/141‑1 (MQ=255)
                                                                                                              cTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTAc                                <  1:330247/141‑1 (MQ=255)
                                                                                                              cTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTAc                                <  1:147808/141‑1 (MQ=255)
                                                                                                               ttGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACg                               >  2:954082/1‑141 (MQ=255)
                                                                                                               ttGTTCAGTACGAACTCTACCTAAAATTGTGCTGTGTTCTACAGCTACATGACCCGCGCCCTTCCAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGATTCGGCTGTTACATCTTTACg                               >  2:506337/1‑141 (MQ=255)
                                                                                                               ttGTTCAGTACGAACTCTACCTAAAATTGCGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACg                               <  1:460777/141‑1 (MQ=255)
                                                                                                               ttGTTCAGTACGAACTCTACCTAAAATTGCGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACg                               <  1:460787/141‑1 (MQ=255)
                                                                                                                tGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCTGGCTTTGCACCAGCACCATGACATAGTTCGCATGTTACAACTTTACgg                              >  2:843754/1‑141 (MQ=255)
                                                                                                                tGTTCAGTACGAACACTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGACTTATTACCTGTTCCAGGCTTTGCACCAGCACCATGACATGTTTCGCATGTTACATCTTTACgg                              >  1:270595/1‑141 (MQ=255)
                                                                                                                   tCAGTACGAATCCTACCCAAAACTGTCTTTTTTTCCACAGCTACATGACCAGCGTCATTACAGCAACTACAAGTCTTTTTCCTTGTTCCAGGCTTGGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGAtt                           <  2:395614/141‑1 (MQ=255)
                                                                                                                        aCGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGATTGAAAt                      <  1:48626/141‑1 (MQ=255)
                                                                                                                               ctACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGATTGAAATTTCtttt               <  1:19249/141‑1 (MQ=255)
                                                                                                                                 aCCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGATTGAAATTTCTTttgt             <  1:39140/141‑1 (MQ=255)
                                                                                                                                 aCCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGATTGAAATTTCTTttgt             <  1:689879/141‑1 (MQ=255)
                                                                                                                                           gtgtTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCCGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGATTGAAATTTCTTTTGTTGTACCAAAt   >  1:105136/1‑141 (MQ=255)
                                                                                                                                           gtgtTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCCTGTTCCCTCTTTCCGGATTGTAATTCCATTtgttgttacgaat   >  2:582249/1‑134 (MQ=255)
                                                                                                                                            tgtTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGATTGAAATTTCTTTTGTTGTACCAAATa  <  1:1090512/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TTCAGGTACTTTCACTTCTAATTTAACTGTTTTATTTTCAGTACCTTTTCCGTGACATGTTGGACAAGCTTCTTCAAATTCTTGACCACTTCCATTACATTTAGGACAAACTTGTTCAGTACGAACTCTACCTAAAATTGTGTTTTGTTCTACAGCTACATGACCAGCGCCATTACAGTAACTACAAGTCTTTTTACTTGTTCCAGGCTTTGCACCATCACCATGACATGTTTCGCATGTTACATCTTTACGGATTGAAATTTCTTTTGTTGTACCAAATA  >  CP000730/1689185‑1689465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: