Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 1,708,278 A→G 7.0% intergenic (‑99/‑8) USA300HOU_1601 ← / → USA300HOU_1602 hypothetical protein/hypothetical membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,708,2780AG 7.0% 251.5 / 7.1 95intergenic (‑99/‑8)USA300HOU_1601/USA300HOU_1602hypothetical protein/hypothetical membrane protein
Reads supporting (aligned to +/- strand):  ref base A (38/49);  new base G (4/3);  total (43/52)
Fisher's exact test for biased strand distribution p-value = 6.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01

CATAACAGTGAATTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTACAGC  >  CP000730/1708138‑1708416
                                                                                                                                            |                                                                                                                                           
cATAACAGTGAATTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGTAATAAGAGGa                                                                                                                                             <  2:514066/141‑1 (MQ=255)
cATAACAGTGAATTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGa                                                                                                                                             <  1:1046333/141‑1 (MQ=255)
    aCAGTGAATTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGAtttt                                                                                                                                         >  1:879067/1‑141 (MQ=255)
    aCAGTGAATTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGAtttt                                                                                                                                         >  1:562806/1‑141 (MQ=255)
    aCAGTGAATTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGAtgtt                                                                                                                                         >  2:289107/1‑141 (MQ=255)
    aCAGTGAATTCGATGCTTCTAATTTGTCCATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGAtttt                                                                                                                                         >  1:796303/1‑141 (MQ=255)
     aaGTGAACTCGATTCTTCTAATTTGTCTAATTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTa                                                                                                                                        <  2:700282/140‑1 (MQ=255)
       gTGAATTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAACTGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACa                                                                                                                                      >  2:259635/1‑141 (MQ=255)
          aaTTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGGTTTTACAATg                                                                                                                                   >  1:605431/1‑141 (MQ=255)
          aaTTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGGTTTTACAATg                                                                                                                                   >  1:559604/1‑141 (MQ=255)
          aaTTCGATGCTTCTAATTTGACTATTTTTCAAAAACTAATCATACCAATTACGTCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAGAATAATAGTGATGAAATATGAGGGTTTTACAATg                                                                                                                                   >  1:672277/1‑141 (MQ=255)
            ttCGATGCTTCTAATTTGTCTATTTTTTTTTTTTTTTTTATATCAATAACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATTATCTGTTTAAAATAATAATGATGAAATAATAGGATTTTACAAtttt                                                                                                                                 >  2:815446/1‑138 (MQ=255)
            ttCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTACAATAATAATGATGAAATAAGAGGATTTTACAATGGc                                                                                                                                 >  1:1031187/1‑141 (MQ=255)
            ttCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATACTGATGAAATAAGAGGATTTTACAATGGc                                                                                                                                 >  1:768548/1‑141 (MQ=255)
            ttCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGCTTTTACAATGGc                                                                                                                                 >  1:638071/1‑141 (MQ=255)
            ttCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGc                                                                                                                                 <  2:781468/141‑1 (MQ=255)
            ttCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGc                                                                                                                                 >  1:939823/1‑141 (MQ=255)
             tCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCt                                                                                                                                <  1:435985/141‑1 (MQ=255)
                aTGCTTCTAATTTGTCTATTTTTCAAAAACTAAGCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGGTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGaa                                                                                                                             <  2:491532/141‑1 (MQ=255)
                 tGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGaaa                                                                                                                            <  2:320845/141‑1 (MQ=255)
                 tGCTTCTAATTTGTCTATTTTTCAAAAAATAATCATATCAATTACATCAACCAATCGTGACAAAAAAATTTATTAAATAACAGGAAAATGCTATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGATaaaa                                                                                                                            <  2:780917/141‑1 (MQ=255)
                 atcTTCTAATTTGTCTATTTGTCAAAAACTAATCATAGCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGaaa                                                                                                                            <  2:914603/139‑1 (MQ=255)
                    ttCTAATTTGCCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACGTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAaata                                                                                                                         <  2:958483/141‑1 (MQ=255)
                      ttAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAaataat                                                                                                                       <  2:620732/140‑1 (MQ=255)
                      cTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAaataat                                                                                                                       <  2:732655/141‑1 (MQ=255)
                        aaTTTGTCCAATTTTAAAAAACTAATCATATCAATAACATCAACCATTCGTGTAAAGAAACTTTATTAAATAACAGGAATATGATATGTTTAAAATAATAATGATGAACTAAGAGGATCTTACAATGGCTTAAAATAATCa                                                                                                                     <  2:806975/141‑1 (MQ=255)
                           ttGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCaaaa                                                                                                                  <  1:387685/141‑1 (MQ=255)
                           ttGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCaaaa                                                                                                                  <  1:336560/141‑1 (MQ=255)
                           ttGTCTATTTTTCAAAAACTAATCATATCAAATAAAGCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCaaaa                                                                                                                  <  1:572543/141‑1 (MQ=255)
                                 ttgtttCAAACACTAATCATATCAATTAAAGCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            <  2:572796/138‑1 (MQ=255)
                                 atgtttacaaaaCTAATCATATAAATTACATCAACCAAACGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            <  2:101533/133‑1 (MQ=255)
                                 aTTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCCCGCCAATTCGCGAAATAATAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            <  1:479236/141‑1 (MQ=255)
                                 aTTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            >  1:528093/1‑141 (MQ=255)
                                 aTTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            <  2:657816/141‑1 (MQ=255)
                                 aTTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            >  1:77719/1‑141 (MQ=255)
                                 aTTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAAtct                                                                                                            >  1:527501/1‑141 (MQ=255)
                                 aTTTTTCAAAAACTAATCATATCAATTACACCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            <  1:276658/141‑1 (MQ=255)
                                 aTTTTTCAAAAACTAATCATAGCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            <  1:934635/141‑1 (MQ=255)
                                 aTTTTTAAAAAACTAATAATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGtct                                                                                                            <  2:111880/141‑1 (MQ=255)
                                   ttttCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCg                                                                                                          <  1:806627/141‑1 (MQ=255)
                                   ttttCAAAAACTAATCATATCAATTACAGCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGATATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCg                                                                                                          <  1:626381/141‑1 (MQ=255)
                                   tttgCAAAAACTATTCATATCAACTACATCAAACAATCGTGTCAAGAAACCTTACTAGATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCg                                                                                                          <  1:1699/141‑1 (MQ=255)
                                    tttCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGt                                                                                                         <  1:509350/141‑1 (MQ=255)
                                       cAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAAc                                                                                                      >  2:80074/1‑141 (MQ=255)
                                       cAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAAc                                                                                                      <  1:128484/141‑1 (MQ=255)
                                       cAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAAc                                                                                                      >  2:369537/1‑141 (MQ=255)
                                          aaaCTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATAGCTGAAAATAATCAAAATAGTCTCGTAACaaa                                                                                                   >  1:1030987/1‑141 (MQ=255)
                                                      tCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATa                                                                                       <  2:737988/141‑1 (MQ=255)
                                                      tCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAAACAAAATAGTCTCGTAACAAAGATAGCTACATa                                                                                       <  1:792593/141‑1 (MQ=255)
                                                         atcacaacaACCAATCGTCTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACgg                                                                                    <  2:355393/138‑1 (MQ=255)
                                                              aTCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAgat                                                                              >  2:626748/1‑139 (MQ=255)
                                                              aTCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGtt                                                                              >  2:866502/1‑141 (MQ=255)
                                                                cAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGgttt                                                                            >  1:510844/1‑141 (MQ=255)
                                                                     aaTCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGc                                                                       >  1:932711/1‑141 (MQ=255)
                                                                      aTCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGTTACATACGGCAGTTTTATTTCa                                                                      >  2:549113/1‑141 (MQ=255)
                                                                           gtCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGc                                                                 <  1:129626/141‑1 (MQ=255)
                                                                            tCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGACGAAGGGGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAGCAAAGATAGCTACATACGGCAGTTTTATTGCAATTGcg                                                                >  1:529191/1‑141 (MQ=255)
                                                                            tCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAGATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGcg                                                                <  1:731157/141‑1 (MQ=255)
                                                                            tCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGcg                                                                <  1:1103231/141‑1 (MQ=255)
                                                                                        attaAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGGTTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCAtt                                                    >  1:307713/1‑141 (MQ=255)
                                                                                        attaAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCAtt                                                    >  1:501571/1‑141 (MQ=255)
                                                                                        attaAACAACAGGAAAATGATATGTTTAAAATAATAATTATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTACCAAAGCTAGCCACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCAtt                                                    <  2:831079/141‑1 (MQ=255)
                                                                                            aaTAACATGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATtttat                                                <  2:808044/141‑1 (MQ=255)
                                                                                            aaTAACAGAAAAATGTTATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATtttat                                                <  2:457874/141‑1 (MQ=255)
                                                                                               aaCAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATAGCTGAAAATAATCCAAATAGTCTCGTAACAAAGATAGCTACATCGGCAAGTTTTCTTGAAATTGCGTCGCTTGTCATtttatttt                                             >  2:540615/1‑140 (MQ=255)
                                                                                                 cAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTtata                                           <  1:80074/141‑1 (MQ=255)
                                                                                                 cAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTtata                                           <  1:369537/141‑1 (MQ=255)
                                                                                                 cAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTtata                                           >  2:17365/1‑141 (MQ=255)
                                                                                                 cAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGATTTATTGCAATTGCGTCGTTTGTCATTTTATTtata                                           >  2:964283/1‑141 (MQ=255)
                                                                                                 cAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAAATAGCTACATACGTCAGTTTTATTGCAATTACGTCGTTTGTCATTTTATTtata                                           >  2:536796/1‑141 (MQ=255)
                                                                                                      aaaTGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGtat                                      <  1:102431/141‑1 (MQ=255)
                                                                                                      aaaTGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGGCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGtat                                      <  2:339215/141‑1 (MQ=255)
                                                                                                      aaaGGATATGGTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGtat                                      <  1:408623/141‑1 (MQ=255)
                                                                                                       aaTGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGtata                                     <  1:219889/141‑1 (MQ=255)
                                                                                                        aTGATATGTTTAAAATAATAATGTTGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTatat                                    >  2:203134/1‑141 (MQ=255)
                                                                                                        aTGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTatat                                    >  1:289407/1‑141 (MQ=255)
                                                                                                          gATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGACTGAAAAAAATCACAATAGTCTCGTAACAAAGATAGCTACAGACGGCAGGTTGATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGAATAttt                                  >  2:105935/1‑141 (MQ=255)
                                                                                                           atatGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTGGTTTGTCATTTTATTTATAAGTATAtttt                                 >  2:1002564/1‑141 (MQ=255)
                                                                                                           atatGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATAtttt                                 >  2:909344/1‑141 (MQ=255)
                                                                                                           atatGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATAtttt                                 >  2:375759/1‑141 (MQ=255)
                                                                                                            tatGTTTAAAATAATAATGATGAAATAACAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATAttttt                                <  2:776932/141‑1 (MQ=255)
                                                                                                             atGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTa                               >  2:936972/1‑141 (MQ=255)
                                                                                                               gTTTAAAATAATAATGATGAAATAAGAGGGTTTTACAATGGCTGAAAATGATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTATTTCATTTTATTTATAAGTATATTTCTaaa                             <  2:672277/141‑1 (MQ=255)
                                                                                                               gTTTAAAATAATAATGATGAAATAAGAGGGTTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTaaa                             <  2:605431/141‑1 (MQ=255)
                                                                                                               gTTTAAAATAATAATGATGAAATAAGAGGGTTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTaaa                             <  2:559604/141‑1 (MQ=255)
                                                                                                                         ataatGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCAttt                   <  1:1013139/141‑1 (MQ=255)
                                                                                                                         ataatGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCAttt                   <  1:894562/141‑1 (MQ=255)
                                                                                                                                tgaAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGGGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAGGTTTTCATTTAATATCg            >  1:115452/1‑141 (MQ=255)
                                                                                                                                     tAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGttt       >  1:854638/1‑141 (MQ=255)
                                                                                                                                      aaGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTa      >  2:133605/1‑141 (MQ=255)
                                                                                                                                       agagGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTAc     >  1:440507/1‑141 (MQ=255)
                                                                                                                                        gagGATTGTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTACa    <  1:801779/141‑1 (MQ=255)
                                                                                                                                         gggATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTACAg   <  2:148941/140‑1 (MQ=255)
                                                                                                                                         agGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTACAg   <  1:186273/141‑1 (MQ=255)
                                                                                                                                         agGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTACAg   <  2:224136/141‑1 (MQ=255)
                                                                                                                                          ggATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGCGTTTCCAGc  >  2:833221/1‑141 (MQ=255)
                                                                                                                                          ggATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTACAGc  <  1:132941/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
CATAACAGTGAATTCGATGCTTCTAATTTGTCTATTTTTCAAAAACTAATCATATCAATTACATCAACCAATCGTGTCAAGAAACTTTATTAAATAACAGGAAAATGATATGTTTAAAATAATAATGATGAAATAAGAGGATTTTACAATGGCTGAAAATAATCAAAATAGTCTCGTAACAAAGATAGCTACATACGGCAGTTTTATTGCAATTGCGTCGTTTGTCATTTTATTTATAAGTATATTTTTAAAGTTTTCATTTAATATCGAGTTTACAGC  >  CP000730/1708138‑1708416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: